K06628

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06628

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06628

Determination of introduced cDNA(s)

  • J023062O22 - Rice Full-length cDNAs - Original: J023062O22

    full reading [+] show sequence

    Nucleotide sequence: J023062O22 - full reading 
    GATCTCCTTT GCCGCCGCTG CCGCCGCCTC GCCATCCCGA GCGAGCATGC 
    GGCCGCCCTC CTCCACCTCC TCCCCTCGCC GCCTTCCCGT TTGCTAGGGC 
    TCCGGCCGCC TTGCCGTTCC TTCCCCTCCT CGTCATCACT AGGGTTTCGA 
    CCTCGCGCCG CGGGGGAGTT TGTAGCCCGA CTGACCCGAA GCTGTTGCCG 
    CCGCCCGCCC TCCCGGCCGC GCCATGGTGA GGCTCACCGC CGACCTGATA 
    TGGAAGAGCC CGCACTTCTT CAACGCCGTC AAGGACCGCG AGCTCGACAT 
    CCGAGGTAAC AAGATCCCCA TCATCGAGAA TCTGGGCGCC ACCGAGGACC 
    AATTTGACAC AATTGACTTG TCAGACAATG AGATTGTCAA GCTTGAGAAC 
    TTCCCGTACT TGAATCGTCT TGGCACTCTG TTAGTTAACA ATAACAGAAT 
    CACACGTATC AATCCCAATC TTGGTGAGTT CTTGCCAAAG TTACATACAT 
    TGGTGCTTAC AAACAATCGT CTTACAAATC TTGCGGAGAT CGATCCCCTG 
    GCATCTCTTC CAAAGCTTCA GTTTCTTAGC TTACTTGATA ATACTGTAAC 
    CAAGCAGCCA GACTACCGGT TGTATGTGAT CCATAAATTG AAGCATTTGC 
    GGTTGCTGGA TTTCAAGAAA GTGAAACAAC AGGAGAGAAT TGCAGCAGCA 
    CAGAAGTTTC ACTCAAAGGA GGCAGAGGAA GAGGCAAAGA AGGTGCCAGC 
    CAAAACTTTT ACTCCTGGAC AGGTGGTGGA TGCTCAAGAT ACCACAATGG 
    AGGAGCAGGG TCCAAAAGTA GTTGCTCCAA CACCTGAGCA AATCACAGCT 
    ATCAAGGCTG CCATTGTGAA TTCTCAGACA CTTGAGGAGG TTGCAAGGCT 
    TGAAAAGGCA CTGAGCACTG GCCAAATTCC TGCTGAATTT GCAATCCCCA 
    AGCCAGATGC TAATATGGCT GATGCTTCAG AGGAAACTGA AAAGATGGAG 
    ACAGATGGTC AGAACCAAGA AAATGGGGCG GATGAGAAGA AGCAAAATGA 
    AGAAAGCACC CCAATTGAAG AGGATTGAAG GCATATGCAC ACACTGATAT 
    AATCTGGCAC CAAGTTGGTG TTAGATTTCC GTTTTATTTG TGGGGGCAAA 
    GCCACATTGC GATGCCTGAT CTCGTTGAAT GCTCTCGCTG GTCTCTAGCA 
    TAGTACCGGT ATTTCTGTAT CTTGTGAATG CTAACATTTT TCAGAAGATG 
    GAAAAACTAT TTGCTGTGTT TAGGAAACAA GCTTGGGGTA TTTTATACCT 
    TCCAGTACCG CT

    Gene models with high sequence identity

    1. AT1G09760.1 [+] show detail - U2 small nuclear ribonucleoprotein A
      E-value: 1e-86; Score: 317.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A 1e-67
    superfamily L domain-like 2.2e-32
    Gene3D no description 6.9e-45

    See the detailed result >

    AT1G09760.1

    Model type
    Protein coding
    Short Description
    U2 small nuclear ribonucleoprotein A
    Computational Description
    U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR