K06650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06650

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06650

Determination of introduced cDNA(s)

  • J013002A10 - Rice Full-length cDNAs - Original: J013002A10

    full reading [+] show sequence

    Nucleotide sequence: J013002A10 - full reading 
    GAGAGGTGCA CGAGAGCGCG CGCGCCGCGC CGCGCCTCGC CTCGCTGATC 
    CGGCAAGCAA ACCGCGGCGC CGCGACGCGA CGCGAACCCC GCCGCGCCGC 
    GAGTGTGGGG GAGCACGAAT GGTAGCCGGC CGCGGTTAGG TAGGTGGGCG 
    CCGCGGGGTG TCGATAGCTC CGGAGGGTGG GGGTGGGGGG AGCAGATCCA 
    GATCCAGCGA GGGCGCGAGC AATGGCGGCG GGGGCGGTGT CGGCGCTGTT 
    CCTGCTCGAC ATCAAGGGCC GCGTCCTCGT CTGGCGCGAC TACCGCGGCG 
    ACGTCTCCGC GCTCCAGGCC GAGCGCTTCT TCACCAAGCT CCTCGACAAG 
    GAGAGCGACG CGGAGGTGCT CTCCCCCGTC GTCCACGATG ACGCCGGCGT 
    CTCCTACATG TTCATCCAGC ACAACAATGT GTTCCTCCTC ACCGCGTCCC 
    GTCAGAACTG CAACGCCGCC AGCATACTCC TCTTCCTCCA CCGCGTCGTC 
    GATGTGTTCA AGCATTACTT CGAGGAGCTG GAGGAGGAAT CATTGAGGGA 
    CAACTTCGTC GTTGTGTATG AGTTGCTTGA TGAGATGATG GATTTCGGGT 
    ACCCACAATA CACGGAAGCA ATGATCCTGA GCGAGTTCAT TAAAACGGAC 
    GCGTACAGGA TGGAGGTCAC TCAGAGGCCG CCCATGGCAG TGACAAATGC 
    TGTGTCATGG AGGAGCGAGG GGATTCGGTA CAAGAAGAAT GAAGTGTTCT 
    TGGATGTGGT GGAGAGTGTC AATATCCTCG TTAACAGCAA TGGGCAGATA 
    GTGAGGTCTG ATGTCATCGG TGAGCTGAAA ATGCGAACCT TTCTAAGTGG 
    AATGCCCGAG TGCAAACTGG GGTTGAATGA TAGGGTTCTC TTGGAGGCTC 
    AAGGCCGAAC AACTAAAGGA AAAGCAATAG ATTTGGACGA TATCAAATTC 
    CATCAGTGTG TTCGGTTGGC CAGATTTGAG AATGACAGGA CTATATCCTT 
    CATTCCTCCA GATGGATCAT TTGATCTGAT GACTTACAGA CTTAGCACCC 
    AGGTGAAACC TCTTATCTGG GTAGAAGCAC AAGTGGAGAA ACATTCAAGA 
    AGTCGGATAC AGATCACAGT GAAGACAAGA AGTCAGTTCA AAGAAAGGAG 
    CACAGCAACA AATGTAGAAA TTGAAGTACC AGTGCCTGAG GATTCGACAA 
    ACCCAAATAT AAGAACTTCA ATGGGCTCTG CGGCATATGC ACCTGAGAGA 
    GATGCGATGG TCTGGAAAAT AAAATCATTT CCTGGTGGCA AGGAATATAT 
    GTGTAGAGCA GAATTTAGCC TTCCAAGCAT AACATCAGAA GATGGAATGC 
    CTGAAAAGAA GGCTCCGATA CGTGTGAAAT TTGAGATACC GTATTTTACC 
    GTGTCGGGTA TTCAGGTTCG CTATCTGAAA ATCATCGAAA AGAGTGGATA 
    TCAGGCCCTT CCTTGGGTTC GATACATCAC AATGGCTGGT GAATATGAGT 
    TGAGACTCAT CTGATTTTCA CACCTCTGGT TGCTGGAAGA AATGATTGAT 
    TTCCTGGAGT CCAAGCCTCC CAGGGGGCGT TTACAGAGGC AACTCAGACG 
    AACATTCACT CGCTGGATGG GCTCCCGAGG CTTCATGGTT CCATCTCGCG 
    CAAGCGAGGA AAGCTGCTGA CAGCCATGTT ATTGATTTTA CCCATGTTTT 
    GCTGCAAGTT TGTCATCAGT ATAGGTCCCC AGAATCTTCA TTTCTTTTCT 
    GCGTTTTGTT CCCAGCCGAT ATCTCTTGTA TCATTGTAAA ATTTATTTAA 
    TCAACTGATG TCACAAGCTT GGATTTTTTT TTGTATCTCC TGTACCTAAT 
    TAACAAGCTT GGATCATGTA TACCACTATG TATATCTCTC CTTTCCATC

    Gene models with high sequence identity

    1. AT1G60780.1 [+] show detail - Clathrin adaptor complexes medium subunit family protein
      E-value: 0; Score: 750.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Clathrin adaptor, mu subunit, conserved site 0
    PatternScan Clathrin adaptor, mu subunit, conserved site 0
    FPrintScan Clathrin adaptor, mu subunit 4.9e-65
    FPrintScan Clathrin adaptor, mu subunit 4.9e-65
    FPrintScan Clathrin adaptor, mu subunit 4.9e-65
    FPrintScan Clathrin adaptor, mu subunit 4.9e-65
    FPrintScan Clathrin adaptor, mu subunit 4.9e-65
    FPrintScan Clathrin adaptor, mu subunit 4.9e-65
    superfamily Clathrin adaptor, mu subunit, C-terminal 3.6e-103
    superfamily Longin-like 5.1e-35
    HMMPIR Clathrin adaptor, mu subunit 9.7e-212
    HMMPanther CLATHRIN COAT ASSEMBLY PROTEIN AP-1 2e-286
    HMMPanther CLATHRIN COAT ASSEMBLY PROTEIN 2e-286
    ProfileScan Clathrin adaptor, mu subunit, C-terminal 99.315
    HMMPfam Clathrin adaptor, mu subunit, C-terminal 2.5e-92
    HMMPfam Clat_adaptor_s 4.5e-05
    Gene3D no description 8.7e-38
    Gene3D no description 1.5e-48

    See the detailed result >

    AT1G60780.1

    Model type
    Protein coding
    Short Description
    Clathrin adaptor complexes medium subunit family protein
    Computational Description
    HAPLESS 13 (HAP13); INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 2206 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1107; Fungi - 506; Plants - 213; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR