K06836

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06836

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06836

Determination of introduced cDNA(s)

  • J013095D16 - Rice Full-length cDNAs - Original: J013095D16

    full reading [+] show sequence

    Nucleotide sequence: J013095D16 - full reading 
    TTGGCAGCAA GCAGCTATAG CTAAGCTCTG AGCTCCATGG CCATGAAGTG 
    CCTCCTCGTC TTCTTCCTCG TCGCCTTCTT CCCCGGAGCC GCGGTCAGCG 
    CCGGGCTGAA GGTCGGGTTC TACAACGAGA CGTGCCCGTC GGCGGAGGCC 
    CTGGTGCAGC AGGCGGTGGC CGCCGCCTTC AAGAACAACA GCGGCGTCGC 
    CGCCGGCCTC ATCCGTCTGC ACTTCCATGA CTGCTTTGTC AGAGTACGTT 
    TGCATCTATC ACGATCGATC CTAGTTTCGT TTATAACTGC ACTGTTTGGT 
    GTAAGAACAG CTAGCTAACC TTGGTTGATT TTGTTTTCTT TGTTCAAAAA 
    GGGAAACTAT TTTAAACTCT CGAGATGGCA TTCCCTCATT ATTTGCATGT 
    CATCCAAATG ATTAAGAAAA AAAATCAACC AGGTATATTA ATATGTGATA 
    AATTATTCCA CAAATATGCA AGGTCAAATT TAACTTCTAT AAGTTTGAAT 
    GAAAAAAATA AATTTGATTA AGAATATTCG TTAACTAGCC ATAGTTTATT 
    TTTTTATAAC CTGTAAAAGT TAAATTTTAA CTTGCATATT TGTGGAGTGA 
    TTTATTATAT GTTAATCTAT CTTGTTAAAT TTTTTTAAAA AAAATTCATA 
    ACTATTTGGA TAACATGTAA ATAACTAGAG GATGTCCTCA CGAGAGTTTA 
    GAATCCACTC CCACACAAAA ATGACAAACT CTAGCAGTGA TAAAAAGAAA 
    AGGTGTCAAT TTTTCATATT ATAGACGCTG TGTTCGGCAA AAGGAGTTGG 
    GAACCCACTC CCTCTTTTTC CACGCACACG CTTTTCAAAC GGTTAAACGG 
    TGTATTTTTT TTAAAAAAAA TTCTATATGA AAGTTACTTT AAAAAATCAT 
    AAAGTCATAT TTATCTTTTT TTTTAAAAAA AATAGCTAAT ACTTAATTAA 
    TCACGTGTTA ATAGACCGCT CCGTTTTCCT TGCGGGAGAG ATTAGTTCCC 
    ATCCCTGCTA CTGAACACAG TTCAAGGGAG AGTTAGCTAA GATATATTTA 
    TGATCATATG TTATGAAAGA TCGGCATATA CGTACCGCTG TTTTTTTAAA 
    AAAAACAGAT CACCTGAAGA AACATTAGTG CTCTCTATTA CAATCACTGT 
    GTTAGAAACA AAATACAACC ATGAACC

    Gene models with high sequence identity

    1. AT4G11290.1 [+] show detail - Peroxidase superfamily protein
      E-value: 4e-07; Score: 53.10

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peroxidase, active site 0
    HMMPfam Haem peroxidase, plant/fungal/bacterial 6.6e-06
    superfamily Haem peroxidase 8.4e-16
    Gene3D no description 9e-14
    ProfileScan Haem peroxidase, plant/fungal/bacterial 13.373

    See the detailed result >

    AT4G11290.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR