K06926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06926

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06926

Determination of introduced cDNA(s)

  • J013002M11 - Rice Full-length cDNAs - Original: J013002M11

    full reading [+] show sequence

    Nucleotide sequence: J013002M11 - full reading 
    GAATCCCCCT CCTTCCTCGA ATCTTCGCTT CCCCCCCCCC CCACCCTTCT 
    CGCCGCGCCA CCGCCTCTAC AAATCCACTA AACCCCCTCC TCCGCCTCGC 
    CGCCGCCATG GGCTCGTCGG CGGCCGACTC GTTCCCCGCT TGTGGAGATG 
    ATGCAATCCG AGACGTGTAC GGCATCGGTG GTGGTGGGGA GGAGGACGAT 
    CCGTCCCTCT TCCTCTACCT CTCCGACCTC GCCCCCGTCT CCCCCTCCGC 
    CTACCTCGAC CTCCCCCCCT CGCCGCCGCC GCCGACGACG ACGGCGACGA 
    CGATGGTGAA GGAGGGGGAG GAGGCGCCGG AGGACCTGGT GCTGCCGTTC 
    ATCTCGAGGA TGCTGATGGA GGAGGACATC GACGACAAGT TCTTCTACGA 
    CTACCCCGAC AACCCGGCGC TGCTCCAGGC GCAGCAGCCC TTCCTCGAGA 
    TCCTCTCCGA TCCCTCCTCC AACTCCCGCT CCTCCAACTC CGACGACCCC 
    CGCCTCTCCC CGACCTCCTC CTCCGACACC TCCGCCGCCA TCAACTCCTA 
    CGACGCCGCC GCCACCGCCA CCGCCGTTGC CGCCGCCGCG GTGCCCGTGC 
    CGCAGTACGA GAGCATCGAG CTCGATCCCG CCGCGTTCTT CGCCGCGGCC 
    AACTCCGACC TCATGAGCTC CGCCTTCCTC AAGGGGATGG AGGAGGCGAA 
    CAAGTTCCTC CCCACCGAGA ACAAGCTCAT CATCGACCTC GAGGCCTCGT 
    CGGAGAATAA TTACCTCAGG GGTCTCGAGG AGGCCAAGAG GTTCCTGCCC 
    AGCGACGACA AGCTTCAGGT TGGATTCGCT GCGGCGGCGG CGCCTGTGGT 
    GAGCGTGAAG AAGGAGGCGG TGGATGTGGT GGTGGCAACC GCCTCGGGCG 
    GCGGCGGACG AGGGCGGAAG AACCCGTACG ACGACGAGGA GCTGGAGCTG 
    GAGGGAGGGA GGAGCAGCAA GCAGACCGCG GTTCAGGGGG ACGATGTCGC 
    GGCGCGCGCC ATGTTCGACA AGGTGATGAT GCCCTCCCAT GAGAATTGCA 
    CCGAGATGAT GGAGAAGCTG AGGATTGCCA TGAAGGAGGA GGCGGCCAAG 
    AACGAGGCCA GCGCCGGCGG GAAGGGTGGG AACGGGAAGG TGAAGGGAGG 
    GCGGCGGGGC GGGAGGGACG TGGTGGACCT GCGCACGCTG CTCATCCACT 
    GCGCGCAGGC CGTGGCCACC GACGACCGCC GGAGCGCCAC CGAGCTGCTT 
    AAGCAGATCA AGCAGCACGC GAAACCGACC GGCGACGCGA CGCAGCGCCT 
    TGCTCATTGC TTTGCTGAGG GCTTGCAGGC GCGGATCGCT GGCACGGGCA 
    GCCTGGTGCA CCAGTCGCTC GTGGCTAAGC GCACCTCAGC CGTGGACATC 
    CTCCAAGCGT ACCAGCTGTA CATGGCTGCC ATCTGCTTCA AGAAGGTGTC 
    CTTCATTTTC TCCAATCAAA CCATCTACAA TGCTTCCTTG GGTAAGAAGA 
    AGATACACAT CGTTGATTAC GGTATACAGT ATGGGTTCCA GTGGCCGTGC 
    TTCCTGCGGC GGATATCACA AAGGGAGGGT GGGCCACCGG AGGTAAGGAT 
    GACTGGCATT GACCTCCCCC AGCCTGGTTT CCGGCCAACT GAGCGTATTG 
    AGGAGACAGG GCACCGGCTC AGTAAATACG CCCAGGAGTT TGGGGTGCCA 
    TTCAAGTACA ATGCCATTGC AGCGGTTAAG ATGGAGTCAG TCCGCAAAGA 
    GGATCTGAAC ATTGATCCTG ATGAGGTGCT CATTGTGAAT TGCCAGTATC 
    AATTTAAGAA CTTGATGGAT GAGAGTGTTG TGATCGACAG CCCAAGGGAT 
    ATTGTGCTCA GCAACATCCG GAAGATGCAG CCTCATGTGT TCATCCATGC 
    AATAGTGAAT GGCTCATTCA GTGCACCATT CTTTGTGACA CGGTTCCGGG 
    AGGCTTTGTT CTTTTACTCG GCCTTGTTCG ATGTTCTGGA TGCAACTACC 
    CCAAGGGAAA GCGAACAGCG GCTGCTGATT GAGCAAAACA TCTTTGGACG 
    AGCTGCTCTG AATGTCATTG CGTGTGAGGG CATAGATCGG GTGGAGCGCC 
    CTGAGACATA CAAGCAATGG CAGGTGCGGA ATCAACGGGC TGGCTTCAAG 
    CAACTGCCAT TGAATCCAGA AATTGTTCAG GTAGTGCGGA ACAAGGTCAA 
    GGACTGCTAC CACAAGGACT TCGTGATAGA TATAGATCAC CAATGGCTCT 
    TGCAAGGATG GAAGGGACGA ATACTCTATG CCATCTCAAC ATGGACGCCA 
    AATGATGCTC TCTCTTATTT TTAGTTGTTT TTTTTTTTGG CATCGCGACA 
    AATATAAGAT CTAGGTATTT CAATAAGATG GCTAGTGGCA GTATGTCATG 
    TATGAAGATC GATGGTGTTG GTGTTGGTTT GATGGACCCA ATGACTTGAG 
    GCTATGAGGG AGAATTGGTA GCCCAAGTTG TTGAAGCCAT AAGATAACCA 
    AGCATGCATG TAGATATCCA TGTTTTTATG TGATGTTAAT TAGTTGCTTC 
    TGTTGTCATG TTGCAGCTTA GTGCCACACT ACCACTTAGA AAATAGACTT 
    AGGTCCTGGT CCGGATGATG TTCGCTGCAG CGTCACCGGT TCTTGCGATC 
    AATCCAGTCA GTTGATCCGG TTGTAATTGA CACCAGTTAC TCTGTTTTTA 
    CTAGGTGCTT ACTGCACTGT GGCAGACAGT AACATTGTAA TATGCTCAAA 
    ATGTTGAACT GGGTTTTGGC TAGTCC

    Gene models with high sequence identity

    1. AT2G37650.1 [+] show detail - GRAS family transcription factor
      E-value: 2e-132; Score: 470.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transcription factor GRAS 5.6e-108
    FPrintScan PRICHEXTENSN 1.2e-10
    FPrintScan PRICHEXTENSN 1.2e-10
    FPrintScan PRICHEXTENSN 1.2e-10
    FPrintScan PRICHEXTENSN 1.2e-10
    ProfileScan Transcription factor GRAS 63.733

    See the detailed result >

    AT2G37650.1

    Model type
    Protein coding
    Short Description
    GRAS family transcription factor
    Computational Description
    GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 14 (TAIR:AT1G07530.1); Has 2417 Blast hits to 2350 proteins in 288 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 2410; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR