K06933

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06933

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06933

Determination of introduced cDNA(s)

  • J023125E11 - Rice Full-length cDNAs - Original: J023125E11

    full reading [+] show sequence

    Nucleotide sequence: J023125E11 - full reading 
    GATCCCATCC ATCCAAGCAC ACGCGCGCAC ACGCACGCAC GCACGTACAT 
    CGCGCGCGCC ACGCCACGCC ACGCCGCGGT CACACCGTTC CAAGCCACTC 
    TCACACGCAC GCGCGTCGCC GCCACTACAC TCTCATGGCT TTCACGGTCA 
    AGGCGTCGTC GCCGTCGTCG CCGGCTGCTT CTTCTTCTTC TTCCTCGGCG 
    CCAGCTAAGC TCGGAGCGGC GCCGGGGAGG GTCGCGGTCA GGAAGCTCAC 
    CGCGGCGGCG ACGTCGCTTA GGCTCGATCG GGCGCCCGCG GCGCCGGCGA 
    CGGAGCGCGG GCTGTCGTCG GTGTCGCGGA CCATGTCGAG GCTGATGGAG 
    AAGGGGAAGA CGGCGTTCAT CCCGTACATC ACCGCCGGCG ACCCGGACAT 
    GGGGACGACG GCGGAGGCGC TGCGGCTGCT CGACGCGTGC GGCGCCGACG 
    TCATCGAGCT CGGCGTGCCC TTCTCCGACC CCTACAACGA CGGCCCCGTC 
    ATCCAGGCCT CCGCCGCGCG GGCGCTCTCC GCCGGCGCCA CGATGGACGG 
    GATCATGTCG ATGCTCGCGG AGGTGACGCC GGAGCTGTCA TGCCCGGTGG 
    TGCTCTTCTC CTATCTCGGC CCCATCGTCC GGCGAGGTCC GGCCAACTTC 
    ACCGCCGCAG CCAAAGAAGC CGGCGTACAA GGTCTAATAG TACCTGATCT 
    TCCTTACCTA GAGGCATGCT CTTTCAGGAG TGAAGTTATC AAGAACAACC 
    TAGAGCTGGT GCTGCTTACT ACACCAACTA CACCACCAGA CAGGATGAAG 
    GCAATCACAG CCGCCTCAGG AGGATTTGTT TACCTGGTTA GTGTCAATGG 
    AGTTACAGGA TCTCGCCAAG ACGTGAACCC GCGTGTTGAG CATCTCCTTC 
    AGGAGATTAA GCAGGTCACT GACAAAGCTG TGTGTGTTGG CTATGGCATA 
    TCAACCCCTG ATCATGTTAG ACAGATAGCA GAGTGGGGTG CAGATGGGGT 
    GATCATTGGC AGTGCAATGG TGAGGCAGCT GGGTGAAGCA GCTTCTCCCA 
    AGCAAGGGCT GAAAAGGCTG GAGAAGTATG CTAGGAGCCT GAAGAATGCA 
    CTTCCATAGA AGCTATAAAA ACAAGTTGCT AAATAATGGC ATGAGAGATT 
    AATTAATTAA TCTCTTGGTG ATGACTAGCT ACATGCATAA AAGGGAAGCT 
    GAAGCTGCCT TTCTCATAGT CTCATAGTTA ACTGTACCGC AAATTAGCAC 
    TAGAAAGTGT TATAGATAAT AAGTGATGTA TAGGCATCCA GATCCTTGGG 
    GACTGTAAAA CACCTCGTCT GTGTAGAGGT CGGATGTTAA TTCTTCGGTT 
    GTTCGAAGAA AATAATTGCT GC

    Gene models with high sequence identity

    1. AT4G02610.1 [+] show detail - Aldolase-type TIM barrel family protein
      E-value: 1e-77; Score: 287.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Tryptophan synthase, alpha chain 1.1e-91
    HMMTigr Tryptophan synthase, alpha chain 4e-84
    HMMPanther TRYTOPHAN SYNTHASE ALPHA SUBUNIT 4.9e-63
    HMMPanther SER/THR DEHYDRATASE, TRP SYNTHASE 4.9e-63
    Gene3D Aldolase-type TIM barrel 2.4e-84
    superfamily Ribulose-phosphate binding barrel 4.5e-90
    HAMAP Tryptophan synthase, alpha chain 34.343

    See the detailed result >

    AT4G02610.1

    Model type
    Protein coding
    Short Description
    Aldolase-type TIM barrel family protein
    Computational Description
    Aldolase-type TIM barrel family protein; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, alpha chain, active site (InterPro:IPR018204), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Tryptophan synthase, alpha chain (InterPro:IPR002028); BEST Arabidopsis thaliana protein match is: tryptophan synthase alpha chain (TAIR:AT3G54640.1); Has 7706 Blast hits to 7706 proteins in 2293 species: Archae - 225; Bacteria - 4607; Metazoa - 6; Fungi - 175; Plants - 137; Viruses - 0; Other Eukaryotes - 2556 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR