K07121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07121

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07121

Determination of introduced cDNA(s)

  • J023148G18 - Rice Full-length cDNAs - Original: J023148G18

    full reading [+] show sequence

    Nucleotide sequence: J023148G18 - full reading 
    GATCTGGCCC AATAATAGCC CACACAACCC TAGGCTGCGC TAGTGTCGTC 
    GGTCCCCATC CCATTCGGCC ACCGATCCCA ATCTCAATCT GACGCCGCCG 
    CCGGCATCCC TGACTCACCG ACGCGGCTGC ACCAGGCGCC GCCGCCGCCG 
    CCTCCGCCTT GATCGTAAGG AAGTAAGTTT GGAGCACCAT GGCTCTGCGA 
    TCGGCGGCCG GTAGGCTGGC GTCGTCCAGC CGCCGCCGCC TCCTCTCTCC 
    GCCCACCAGC ATCCACACAG CCTTCCTCCA CTCCCACGCC ACCAGCTTCG 
    GATACAAGCA AGTAGCTGAA GAGGACAAAA GCAAATTGGT CGGTAACGTC 
    TTCAGCAGCG TCGCCTCCAG TTACGATCTC ATGAACGATC TTATGAGCGT 
    TGGACTACAT AGGTTGTGGA AGGACAGGCT CATCTCAAAG CTTAATCCTT 
    TTCCTGGGAT GAAGCATCTA GATGTGGCTG GTGGAACAGG GGATGTTGCC 
    TTCCGTGCGC TCGAGAGAAT CAATAGCGTG AGCCATAGAG CTATGCAGGG 
    TACTCTTACT GATATTGAAG AAGAAACACA AATCTATGTT TGTGACATTA 
    ATCCAAATAT GCTGAATGTT GGAAAGAAAC GTGCTTCAGA AAGAGGATAC 
    AAAGAAGGCC ATTGCCTTAG CTGGATACAA GGAGATGCTG AAGCTCTGAG 
    TTTTGAGGAT GGATCTATGG ATGGCTATAC TATTGCGTTT GGGATCAGAA 
    ATGTGACACA CATTGAAAAA GCTCTATCAG AAGCTTATAG AGTCCTAAAG 
    CGAGGGGGAA GGTTCCTATG CTTGGAATTG AGTCATGTGG ATGTTCCGCT 
    TTTTAAAGAG ATTTATGATG TTTATTCATT TTCTGTGATT CCGGCTGTGG 
    GAGAACTAGT GGCCGGTGAT CGCCAGTCAT ACCAATACTT GGTTGAGAGT 
    ATCCGCCGGT TTCCAAATCA GGAAAAGTTT GCTCAGATGA TCCAAGAAGC 
    CGGTTTCGAG AGGGTAGAAT ACGAAAATCT GGTGGGTGGT GTGGTTGCCA 
    TTCACTCTGG ACTGAAACTG TAGAACATTC TGGGTTTCAA GTTTGATGGA 
    TACTTTACTG TTACTCCTAC GGCAACGGCA AGGTCTTGTG AAGCGGGCGT 
    TAAGAATCAG GACCTAACGA ACAAACTAAC TCAATCTTGT ACCAGTAGTT 
    AGCATTGCAA TAAATACATG CAGTGTTTCT GTACATGTTT CTTGTATTTA 
    TTTTTTTTAG ATGAAAGGCT TTTGACAGCC CAGCTTTACT GAAAAGCATA 
    AAATGTTGTT TTGACAACCA AAACAAACAA CTAAAAGGGA GTCACACTAG 
    ATTGAC

    Gene models with high sequence identity

    1. AT5G57300.3 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 2e-117; Score: 419.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 3.3e-44
    PatternScan UbiE/COQ5 methyltransferase 0
    PatternScan UbiE/COQ5 methyltransferase 0
    HMMPfam UbiE/COQ5 methyltransferase 5.5e-88
    HAMAP UbiE/COQ5 methyltransferase 39.09
    HMMPanther UbiE/COQ5 methyltransferase 4.6e-129
    HMMPanther METHYLTRANSFERASE 4.6e-129
    Gene3D no description 2.7e-46
    HMMTigr UbiE/COQ5 methyltransferase 1.2e-113

    See the detailed result >

    AT5G57300.3

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G23360.1).
    Link
    InterPro Scan - TAIR