K07408

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07408

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07408

Determination of introduced cDNA(s)

  • J023099B17 - Rice Full-length cDNAs - Original: J023099B17

    full reading [+] show sequence

    Nucleotide sequence: J023099B17 - full reading
    GCCCCCACCA CCACCGCCAG CCACCAGCCA CTGCCGCGGC GGGAATCCGG 
    TTCCCGCGGC GACATCCCCC ACGTCTCCGC CGCTGCACCG GCAAAGGCAG
    CTGCACCGCG ACCCACCCGC GCGCTCCCAA TCGGCCCCAA GATTAAGATT
    AAACCAGGAG AGACCACCCG ATCGAGTGTT CTCTCACTTT CGCCATGGAG
    CACCGACTGT GGTCAAGCGG GGCTAGCGAC AAGAACAAGG CAATGGTTGA
    GCAGCTCCAG AGGTACGGGA TTATCAAGTC GAGCAAGGTC GCGCAGGTGA
    TGGAGACCAT CGACAGGGGG CTGTTTGTGC CTCCTGGTGC TTCTCCCTAT
    TTCGACAGCC CGATGCCCAT CGGTTACAAC GCCACCATTT CTGCGCCTCA
    CATGCACGCC TCTTGCTTGG AGCTCCTGGA GAAGCACCTT CAGCCTGGCA
    TGCGTGCTCT GGATGTTGGA TCAGGCACAG GGTACCTAAC AGCTTGCTTC
    GCGATTATGG TTGGACCAGA AGGGCGAGCA GTTGGTGTTG AACATATCCC
    AGAGTTGGTT ACTTCGTCTA TTGAAAACAT CAAGAAAAGT GCAGCGGCTC
    CACAGTTAAC TGATGGATCC CTCAGTATAC ATATTACCGA TGGCAGAGAA
    GGTTGGCCAG AGCTCGCACC CTATGATGCC ATCCATGTCG GAGCTGCTGC
    ACCGCAGATT CCACAGGCGT TGATTGAGCA GCTAAAGCCC GGTGGCAGAA
    TGGTGATCCC AGTTGGGACT ATGTTCCAGG AGCTGAAAGT GGTGGACAAG
    AACCAGGATG GCAAGGTCAG CATAAGAGAT GAGACGGCTG TGCGCTATGT
    GCCCCTCACA AGCAAGGATG CGCAGCTGCA GGCTAACTGA ATGCACTACC
    ATAATATTCT GCTGAATGTA AAACCTTCAA TGCGTGATCC CAGTTACATC
    AAGATGTTAT TATTGTACAT AAATTGGTCC TACCGTATGT GTGAATCGCT
    TGGTGCTTGT CAACAATGTT GGATGTTGGT TCGTCATGAA GCATGGAAGT
    ATGTGCTTGT GTCG

    Gene models with high sequence identity

    1. AT3G48330.2 [+] show detail - protein-l-isoaspartate methyltransferase 1
      E-value: 9e-95; Score: 343.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase 7.4e-86
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.3e-54
    HMMPanther Protein-L-isoaspartate(D-aspartate) O-methyltransferase 1.4e-95
    HMMTigr Protein-L-isoaspartate(D-aspartate) O-methyltransferase 2.4e-82
    Gene3D no description 9.1e-61

    See the detailed result >

    AT3G48330.2

    Model type
    Protein coding
    Short Description
    protein-l-isoaspartate methyltransferase 1
    Curator Summary
    encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.
    Computational Description
    protein-l-isoaspartate methyltransferase 1 (PIMT1); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process, response to salt stress, aging, response to abscisic acid stimulus, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, seed; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: protein-l-isoaspartate methyltransferase 2 (TAIR:AT5G50240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR