K07727

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07727

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07727

Determination of introduced cDNA(s)

J013000B05 - Rice Full-length cDNAs - Original: J013000B05

full reading [+] show sequence

GGTTGTATAC CAAACGGCAA TACGCGCCTC TCTCTCTCTC TCTCTCTCTC 
TCTCTCTCCC CTCCTTCCCT TCCCTCTCTC TCTCTCCTCA ATTCCCCATT 
CCACCAACGC ACGCACCAAC CCGCCATTCC CTCCCAAAAC CAAATCCCCC 
GTCGACGCGA GAGGAATCCA ATCCTCCGAA TCGTCTCCCA ATCCCGCGCG 
CCGATCGACA GATACAATTG CTAATTAGTA CAAAATGGCT ATAAGCTTCA 
AATATTGGGA TGACTGCTTG GATCCAGAGG ATATGCAATT AATGTGGGCT 
GATCCTCATG TAAGTAAAGA GTGGATTGAT GCTGGGGAAG GGCCGGGACA 
GAAGGTTCAC CTGTCACGGG ATCCTGATGG TGAGGCATAT CTCACACAAA 
CTGAAATGAT GGCGGTGGCT GCAATTACTG TTCATAAGCA TTTCAAGTCA 
CAGCTAGACC CGTATATGAT AGGTGCCCTT GCAGAAATTG CAAGTGGAAG 
GAGACTCTTT GTCGATAATT ATGACCGAAA GACTAAGGAG ATCAAAGCTG 
GCATAATGCA GGTGACAATA GAAGTTGCTC AATGGCTTGG CAGGGAATTG 
GGTTACAAGT ATTATGACAT TGAAGAAGAT GCTAATTTGC TCTATTGGCC 
TTTTGTGAAT GTCTACTTTG GTGCTGCTTA TGCAAAATGG CTATTCTCAT 
GTGACGATAA AGAAAGAACT GAAGAATTCG TTGTTAGAGC TTACAAGGGA 
GGCAAAAAGA AGGCTGTTCA CAAATCAACT TCCCCCATCT TTCAACGCTA 
TCTTTATGTG AAGGAGGCCT TGCTGTCTAT GAGACAGCCA GAAAGTTTTA 
ATGATTTAAC TCCTAATCTC CTAGCCAATT CCTCGAGCAC AGAAGGACAG 
TTGATTTATT GGGATTCCAA GGTATCAGAG GTAGATATGG ATGCGATGTG 
GAGTCAGCCC GATGTGATTA AGGAGTGGAC AAAATCTGGT GAGAGGCGAG 
GAAATGTGAG GTTTTCTCAT GACTCCAAGA GGAGGCCTTA TCTTTCTCGA 
GTTGAGGTGA AGGCTGTTGC TGAAATAACC ATATCACGTC ATTTGAGCTC 
AAAAGGAGTA ACACCAGAAG CCCTAGCTGC TCTTGCTGAG GTGTGCAGTA 
TGCGTTTTGT CCATGGTGTT CGTTCTCGTA CTGGCTTGAT GGGAATAGAC 
TACCCTACTG CAGCATGGCT TTACAGAGAT TGTGGCCATA GGGCGTATAC 
TGTCAGCTCC GTAGATGATC TATACAATCC TTTTACATCA ATGTACTTTG 
GCGCAGCTTA CTTGGGATGG TTGTCACAAT ATGAAGGAAG AGAAAGAAGT 
CACGAGTTCA TTGTTCAGGC ATACCTTGGG GGACCAGAAA ACGTTAGCCT 
TCAGGAGACT GGCCCATTTT GGAACAAATT CCTGGAGGCC TTAAGACTAT 
ACCAAGATCC AAAGAAGGAA CAAGCAAGCT GTTGTATTTT GTAAAAGTTG 
TCCTGATGTG CCCTTATGTC TTTGTTTGGT GAAGGCTCCC ACTCAAAGGA 
TTCAACGCTA ACTAGCAACG GGCTTGCTTG GATTCCATTT GTACATATTT 
GGTCATTTGA TACCCTGCTC GTGTTCCAGT TTTCAACTGT GGTTGATCCC 
CACTGGGTGC TCACAGAGCT ATGCCCTCCT CTTCTTCTGT CCATATATTT 
TGCTTTTCTG TACTAAATAT ATTAACGGCC TTTTTTTTTC TGCATACCGG 
TATGTTATAA AAATCACTTT TGATATATAG ATACCCAAAA GGAATTGACT 
CAAACAAAAT TAAAAAGGAA AAAGGTTCAA TTACATAAGA CTACTGTTTT 
AGGAAAAATG TTTCATGGAG GATTGTTAGT TCTTCATTAC AGACTAGAGA 
ATGTAAAATT TTCAGGCATA TTGCTTATGG CTCATTATAC ATCTC

Gene models with high sequence identity

AT1G16290.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: ch...
E-value: 6e-133; Score: 471.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	0.00012
superfamily	Lysozyme-like	4.5e-15
superfamily	Lysozyme-like	1.6e-11
HMMPfam	Lytic transglycosylase-like, catalytic	6.2e-06

See the detailed result >

AT1G16290.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link: InterPro Scan - TAIR