K08219

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08219

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08219

Determination of introduced cDNA(s)

  • J013087B05 - Rice Full-length cDNAs - Original: J013087B05

    full reading [+] show sequence

    Nucleotide sequence: J013087B05 - full reading 
    TGGGCGTCGG ATGCCGCCGC CGCGACCGCG ACCGCCATGG CGTACCGCCG 
    GAAGCCGCAG CCTCCGCAGA CGCCGCCGTC CTTGGACCAC CACCACCACC 
    ACCACACCCC CTCCGTGGGC CCCTCGTCCC CGCCGCAGGA CTCCCTCGCC 
    GCGCAGGCCA TGCGCGCCTC CGCCGCGCAC CGCGACGCCT CCTCCCTCTC 
    CTCGGCCTAC TCCTCCTCCT CCGCCTCCGC GGCCGCCGCC GCCGCCGCGG 
    CTCGCCGGGG CCACCACGAG CCCTCCGTCT CCACGCCTTC CCCCGGTTCT 
    TCGGGTTATG AATACACATC CATGAAGAAC TTGAATGAGG CTAAGTACGG 
    ATTTTGGGGG GCCCTTGCTC GGAAAGCCAA GTCTTTTCTG GACGAGGATG 
    GTTCACCAGG GCAGTATGAT TCCCCGGCGA GGCAGCAGCC GTCAAGAGAT 
    GCGCCGCCGG TTGGTGTCCA GTATACACGC TCACAACAAC CACCGTCTGA 
    AACATGGAAA TCCGAGACAC CTCCATCTCA TAAGAGGTCC GAGGCCATAG 
    CTTCCTCCCT CAACTATATT GGTGGCACAA TAAAAAGTGC ACTTGAAGAA 
    GGCCGGACGA TTGTAGAAAA TAAAACAGCC GACATTATTC ATGAAACACG 
    CAAATTGAAC ATAAGAAGAA AAGGAGCTGG CTCAACTACA CAAGGAGAAG 
    CTCCACAAAG ATTTACTCAA AGGAATCTTC CACAAAATCC ACTTGACTAC 
    GAAACTCAAT TGAAGGCATC TCGCGACGTT GCAAATGCCA TGGCAGCAAA 
    AGCAAAGCTG CTATTACGTG AGCTGAAGAC TGTGAAGGCC GATTTAGCTT 
    TTGCAAAGGA ACGTTGCGCT CAGCTTGAAG ATGAAAATAA GATTTTGCGG 
    GAAAGTCACG ATAAGGGTGA TAACCCTGAA GATGATGATC TGATCCGCCT 
    CCAACTAGAG ACACTATTAG CTGAGAAGGC ACGGCTCGCA CATGAGAATT 
    CGGTGTACGC TCGAGAGAAT AGATTCCTAC GAGAAATTGT TGAGTACCAC 
    CAACTTACTA TGCAGGATGT TATATATGTG GATGAAGGCA TTGAAGAGGT 
    CACTGAGGTC TACCCTACAC AAGTATTACC ACCTGCACCT TCTCGGGCTG 
    GTTCAGGCCT TGGTCGCTCT GTAACCCCAG CTACTCCCAA GACTGCCAGC 
    TCATCACCTT CATCAACATC CATTGTTGTA CCAGAAACTT GTCCGGTCGT 
    TCCAGCCTCC CCAAAGTCGC TTTCTCGGAC TTCATCTAAG CAATAGATCA 
    AGCCCGGCAC CACCAACCAT GCTGAAGATT AAAAGGTGGT TAGTGGTGCG 
    ATACAATCCG GATGCCATTG CAAATGTAAA ACCAAAGCTG CGCCGTTGCT 
    GTGCCCTGTA TGTTAGTCTC TGATGAGTTG TGTCCTGGAA ATGTGCGGAC 
    AAATGATGTT CATGCCTGAG ATGTTTGTAT GATCCGGTGT AACTTACACA 
    GTATTTATAA TTTTACTGCA TCATCGATTT GGT

    Gene models with high sequence identity

    1. AT2G30530.1 [+] show detail - unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRE...
      E-value: 2e-69; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    FPrintScan PRICHEXTENSN 7.4e-12
    FPrintScan PRICHEXTENSN 7.4e-12
    FPrintScan PRICHEXTENSN 7.4e-12
    FPrintScan PRICHEXTENSN 7.4e-12

    See the detailed result >

    AT2G30530.1

    Model type
    Protein coding
    Computational Description
    unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria - 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12; Other Eukaryotes - 4563 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR