K08224

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08224

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08224

Determination of introduced cDNA(s)

  • J013046E02 - Rice Full-length cDNAs - Original: J013046E02

    full reading [+] show sequence

    Nucleotide sequence: J013046E02 - full reading 
    GTGTCATTAA ACTCTACAAC GTACGTATCT CTCCTCTCCT CCTGCTCCCG 
    AGCATTCCGT CCCCATGGCT GTTGACGATC TAAACCACCA CCTCATCGCC 
    GTCGGAGTCG GAGAAGAAGC CGCCACCGCC CATTGTGGGC TGCGCACCCT 
    TGTGCGGAAT ATGGCGCAGC TGGTGGTGTC GCTGGGCATA TTGGTCGCCG 
    CCGACAAGTT GGTGGAGCAG GCCTTCGCAG CCGCCTCCAT CAAGTTCCCC 
    AGCGCCCTCT TCGCCATGTT CTGCGTCTTC GCCCTCCTCC TCTTCCTACC 
    TCCTTCGCTC GCCAACGGAT TCATGGCTTT CTTCGACCCC GCCACCGTCT 
    TCATCCACAG GTGGCTGCCC CTCTTCTTCG TCCCCTCCCT CGTCGTCCTG 
    CCGCTTGCCG TCAGGGACGT CTCGCCTGCT TCTGCCCTCA AGATCCTCTT 
    CATCACATTT GGTGGCTGGT TTGCTTCACT GGTGGTGGCT GGTTACACGG 
    CGCTGAGTGT GAGAAGGATA GTGAAGACAC AGCTTATACC AGCTGAGCCC 
    ATGAAGAGAC CGTCTCCTTT CGGGCCGCTT GAATTCTGGG CCTGGGCTGC 
    TGTCTTTGTT GCTTCCTTTG CTGTTGCGTA TGTTTCCCCC ACTGCGCTTG 
    GTACCACCGC AACAACATGC CTTCCTTTCT TGCTTGCTTC CACTGTTTTC 
    GGTTACATCC TTGGTTCCCG GTTACCATCT GGTGTCAAGA AAGTGCTACA 
    CCCAATCATC TGTTGTGCAC TTTCTGCAGA TTTGGCGGCA GTAGCATATG 
    GGTATCTCTC CCGGTCTGGA GTGGATGCAG TGCTAGGTGA TTACCTCACA 
    GAGTCTCCGT CAAATCCAGG AGCTGGTGAC ATCCTCATGG GATTTCTTGG 
    GTCTGTCATC ATATCGTTTG CATTTTCAAT GTTCAATCAG AGAAAGCTTG 
    TAAGGAGGCA TGCAGCGGAA ATTTTCACAT CAATCGCTGT GGCATCAACA 
    TTCTCGTTAT ATTCAACTGC CATCCTAGGA CGAGTGGTAG AGCTAGAGCC 
    AATATTGACC ATATCAATAT TGCCCAGGTG TATAACCGTG GCATTAGCTT 
    TGAGGGTAGT TTCTCTCTTT GAAGGTGTAA ATACTTCAGT AACCGCAGCG 
    GTGGTTGTCC TCACGGGGCT GATCGGCGCA AATTTTGCGC AAGCAGTGAT 
    GGACAAGCTT CGCCTCAAAG ACCCCATCGC ACGAGGAATA GGGACAGCTT 
    CCAGTGCCCA TGGACTGGGA ACGGCAGCGG TGTCAGCCAA GGAGCCTGAA 
    GCGTTGCCCT TCTGCGCCAT CGCCTACGCC CTAACGGGGG TCGTCGCCTC 
    GTTATTTTGC TCTCTTCCGG CGATCAGGCA CAGCTTAGTC TTCATAGCTG 
    GCGATGCCTC TGCCTCACAA ACACAACACT TTTCTTACTA GTATTATTTG 
    GATATATATT TGTTTGTCTG TCACTATTCA TGAAAAACAG ACCCAGTACA 
    GATTGATATT GTGATTAATA ATCCTACGAC CGAATAAATA CTGTATATAC 
    AGAGACACGT ATATATGGTA GGAGTAACAT GGAAGGGAGA ACTATTTGTA 
    TATGTAATTA ATTTTTGTAA GGGAGGACCT GGACTTGGTG G

    Gene models with high sequence identity

    1. AT1G32080.1 [+] show detail - membrane protein, putative
      E-value: 2e-146; Score: 516.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G32080.1

    Model type
    Protein coding
    Short Description
    membrane protein, putative
    Computational Description
    membrane protein, putative; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LrgB-like protein (InterPro:IPR007300); Has 3603 Blast hits to 3592 proteins in 1271 species: Archae - 22; Bacteria - 3356; Metazoa - 0; Fungi - 58; Plants - 57; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR