K08230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08230

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08230

Determination of introduced cDNA(s)

  • J023005G23 - Rice Full-length cDNAs - Original: J023005G23

    full reading [+] show sequence

    Nucleotide sequence: J023005G23 - full reading 
    GATTCATCAT CCCCCACCTG TTTCCCCCCA CGCCACCGCG ATGGACACGC 
    CGCCTCCACC TCCTCCGCCG CCGCCGCCGA CGCCGACGCA GTCGTCGCCG 
    CCGGTGAACT GGGACGCGCT CGACGCCCTC GTGCTCGACT TCGCCAGATC 
    CGACCGCCTC CTCCTCCCGC CGGCCTCCCC GTCGCCGCCC TCCTCCCCGT 
    CCTCGTCCTC CACCACCACC GCCACCTCCT CCTCCTCCTC GGCGCCCTCG 
    CCGTCCTCCT CCTACCGCTC GCGCCTCCTC ATCCGCCGCG CCCGCACCGC 
    GCTCGAGGAG GGGGACGTCG ACGCCGCGCT CGCGCTCCTC CGGGCCCACG 
    CCCCCGCCGC GCTCCTCGAC CACCGCCTCC TCTTCCACCT CCACAAGCAG 
    AGATTCGTGG AGCTTGTGAG GAGGGGCACG GAGGCGGACA GGGAGGCGGC 
    GCTGGACTGC CTCCGCACGG CACTGGCGCC CTGTGCGCTG GATGCCTACC 
    CGGAAGCTTA TGAGGAGTTC AAGCATATAC TGCTAGTATT GATATATGAC 
    AAAGATGATC AATCATCCCC TGTAGCAAAT GAGTGGTCTA TAAAGAAGCG 
    ATTTGAGCTT GCTGGATTGC TATCATCCAT ATTGAGAACT CATTTACAAG 
    CTTATGATCC TATTCTATCA ATGACATTAC GGTACTTGAT AAGCATCCAC 
    AAACTACTTT GCTCGCGCCA AGGAATTTCT TCGCCTATAT CTAATCTGAC 
    TGAAAGGCTG CTGTTTGATG ACCGTGATCC ACCTGCAGTT CCTCAGGAAT 
    GCTCGCTAGA AGCGCCACCA TTTGATGAGG TAGATGTGCA AGCCCTAGCA 
    CATGCTGTGG AGTTGACAAG ACAAGGGGCT GTTGACAGTT TGAAGTTTGC 
    GAAAGGAGAT TTATTTCAAG CGTTTCAGAA TGAATTGTGC CGAATGAAGC 
    TGGATCTGCC ACTTCTGGAT AAACTTATAC ACGAGTACTG TATATACAGG 
    GGAATAGTTG AAGGTGGTTC CCATGTCCTT CCTGGATTGC AAAGCAATAA 
    CCAAAGTAAT GATGTCAATT TCGTAGATAA ACAGGAAGAC AGTACTGAAA 
    CACGGATTGA TTTTGAAATG ACTAACAATC AGAATGGAAA TTGTAGCACC 
    AGTGATACTT CCCATCATGA TTCCTGGTCC AGGAGATTAC GTAGGGTTAG 
    AAGTAGTGCA TCGGGGCAAC GAAGGCGGAA GAGATGGAGA GGACGGGTAG 
    ATGATCTGGA TTATGGTTGT GAGACCCCAT TGGATGCAAA TAAACATGCT 
    ATTTTATGTT CTGCTCTTGA CATGGATGAA GATGATATGA TAGTTAAACC 
    AGACTTGATG GCAGATACTG GTTTGCCTGA TTCTAGATGT AATCAAGATC 
    AGAAATATGA AGTTATTTTA GAGATGAGGG ATCTCACACG CAAAGGAATG 
    GCTTCAAAAG TTGTTGAAGA GATAAACAAC ATGGATCCTG ATTTCTTCTT 
    GAAAAACCCT ATTCTTCTAT TTCAGCTGAA ACAGGTTGAA TTTCTTAAGC 
    TAGTAGCTTC TGGTGATCAC GGAGCTGCTC TCAAGGTTGC ATCCACTCAT 
    CTGGGGCCTC TTGCTGCCAG TAACCAAGCT TTACTGAAAC CTTTGAAGGA 
    AACTTTAGTA ACACTAATTC AACCCTGTGA AGATGTACTC ACAAAGTCAG 
    TTTCATTACC CGTTCTTGCA AGTTCTCTCC AGATTGCAAT GAGCAGGAGG 
    CTTGGTATTG AAGAACCTCA GTTAATGAAG ATAATTAGAA CAACACTTCA 
    CACGCACAGC GAATGGTTTA AGCTTCAGAT GTGCAAGGAC CGTTTTGAGC 
    ACTTTTTGAA GATTGATTCT CTAAAAGAGG TTGATCCATC TGCGGGGAGT 
    CACAATATGT CCAAGGTTCT TACAGATGAA TGTGCTAATG GATCTTCTCA 
    AATCACAACA TGCTCTAGTG GCAAGGTGCT AGATGAAGGT AGTAGCCCTC 
    AGGAGTCATC AGAAGTTACC TGTGATGAAA ACGCCATACT CAAGGTCATG 
    GAATTTCTTG CTTTGCCAAG GGCTGACGCG ATCCAACTGC TTATGCAATA 
    TGGTGGGAAT GCCGAGGAAG TCATCCAACA GATCTTTTCG TAGTGCTTTG 
    TGTAAATATC AGATACGTTT CATTTGTTTT AGAAATCAAT TATTTGTTCA 
    TACTTTTCTT GTATATGAAG TTCTATTGGA ACTAGGTTTC TGGTCCCAGT 
    ACCTTTGTCC ACTACGTTTT CTTCCATGTA ATACAGAAAC AAAGATGAAA 
    AAATAATCCG GTTCACACTT CCC

    Gene models with high sequence identity

    1. AT5G66810.1 [+] show detail - CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis th...
      E-value: 1e-169; Score: 593.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart CTLH, C-terminal LisH motif 1.29999924468179e-10
    HMMSmart CTLH, C-terminal LisH motif 5.99999702863249e-07
    ProfileScan CTLH, C-terminal LisH motif 0
    ProfileScan CTLH, C-terminal LisH motif 0
    HMMPanther PTHR12864 0
    HMMPanther PTHR12864:SF2 0
    FPrintScan PRICHEXTENSN 8.6e-09
    FPrintScan PRICHEXTENSN 8.6e-09
    FPrintScan PRICHEXTENSN 8.6e-09
    FPrintScan PRICHEXTENSN 8.6e-09

    See the detailed result >

    AT5G66810.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR