K08350

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08350

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08350

Determination of introduced cDNA(s)

  • J023018D17 - Rice Full-length cDNAs - Original: J023018D17

    full reading [+] show sequence

    Nucleotide sequence: J023018D17 - full reading 
    GATCCGTGTC CATAGAAATT CCTCTATCCT TGATTGATTC TTTCTTTTAT 
    TGTTTTTTTT TCTCTTCTTC CTCTTGGAGG GGGAGGAGAT TTGGGGAATA 
    ATCAACGTAC ATTACCCAGT CTCACACTCC CACGATCCCG TCAAGGGCCG 
    CCGCAATGCG CGTCCTCGCC GTGGCCCTGC TCGCCGCGGC GGTGTTGGCG 
    GCGGAGGCGG CGGCGGAGCT GCAGGAGTTT CGGGAGGCGC CGGCGTTCCG 
    CAACGGCGCG GGGTGCGCGG GCGCGCCGAC GATCCACATC GCCATGACGC 
    TGGACACCAC CTACCTCCGG GGCTCCCTCG CCGGCGTCCT CTCCGTGCTC 
    CGCCACGCCG CCTGCCCGGA GTCCATCGCC TTCCACTTCG TCGCCTCCTC 
    GGCGTCCCCC GCGCGCCGCC TCGCGGCGCT CCGGCGGGCC CTCGCGGCGG 
    CGTTCCCCAC GCTCCCGGCG ACCGTCCACC GCTTCGACGC GCGCCTTGTC 
    CGCGGCAAGA TCTCCACCTC CGTCCGCCGC GCCCTCGACC AGCCCCTCAA 
    TTACGCGCGC ATCTACCTCG CCGACCTCCT CCCGCGCTCG GTGTCCCGCG 
    TCCTCTACCT CGACTCCGAC CTCCTCGTCG TCGACGACGT CGCCCGCCTC 
    TGGGCCACCG ACCTCGGCCC CGACGCCGCC CTCGCCGCCC CCGAGTATTG 
    CCACGCCAAC TTCACCTCCT ACTTCACCGA CGCGTTCTGG AGTCACCCCG 
    AGTACTCCTC CATCTTCACC AACCGGGGGC GCGCGCCGTG CTACTTCAAC 
    ACCGGCGTCA TGGTCATCGA CCTGGACAGG TGGCGAGCCG GCGGGTACAC 
    CGTGAAGCTG GAGTACTGGA TGGAGGTCCA GAAGCAGGAG GCCAGGATAT 
    ACGAGCTGGG GTCGCTCCCG CCGTTCCTCC TGGTGTTCGC CGGCGAGGTG 
    AAGGCCGTGG AGCACCGGTG GAACCAGCAC GGGCTCGGCG GCGACAACGT 
    CGCGGGGCAG TGCCGGGAGC TTCACCCTGG GCCGGTGAGC CTGCTGCACT 
    GGAGCGGCAA GGGGAAGCCG TGGCTTCGGC TCGACGCCGG CCGGCCGTGC 
    CCGCTCGACG CGCTCTGGGC GCCGTACGAC CTGCTCCGCC GCCGCGGCGC 
    TCGCGACGAC CTCCTCGCCG CCGTCGCCTG ACAATGCGGG GCCCACGTCG 
    CTGGAGCGAT CGGTTTGTTC GAGTTCGGAT CGGTGGCCTC GCTGCTCTCG 
    ACACTCGTCG CGAGGTAGGT GTCGGCGCTG GGGCACTGAC ACTCCGGCCC 
    ACTTGGGCCT CCACGAATGG GCCAACATGG CTGAGGTTGG AGTGGCCCTG 
    TCGGTACTGA CAGCCGGGCC CACATGTTGG TGATGGATGG CAAGATTTTG 
    TTCGTGAGGG GAAGCTGACG ACGCAGCAAT GGTTGTGTAC AGCTGTCTTT 
    TTTTTTTTGC CTGTTTAAGG GAATAGATTA CCAGATAATT CAGATTCCAT 
    TCGTTTTAGA CAGGGTTAAA AATTCGTTGT TGATGTGTTC CATAATAAAA 
    TACGCAACAA AAAAATATTG TC

    Gene models with high sequence identity

    1. AT1G13250.1 [+] show detail - galacturonosyltransferase-like 3
      E-value: 3e-96; Score: 349.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycosyl transferase, family 8 2.6e-55
    FPrintScan PRICHEXTENSN 2.4e-12
    FPrintScan PRICHEXTENSN 2.4e-12
    FPrintScan PRICHEXTENSN 2.4e-12
    FPrintScan PRICHEXTENSN 2.4e-12
    FPrintScan PRICHEXTENSN 2.4e-12
    superfamily Nucleotide-diphospho-sugar transferases 2.2e-56
    Gene3D no description 1.1e-59

    See the detailed result >

    AT1G13250.1

    Model type
    Protein coding
    Short Description
    galacturonosyltransferase-like 3
    Curator Summary
    Encodes a protein with putative galacturonosyltransferase activity.
    Computational Description
    galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR