K08438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08438

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08438

Determination of introduced cDNA(s)

  • J033068E17 - Rice Full-length cDNAs - Original: J033068E17

    full reading [+] show sequence

    Nucleotide sequence: J033068E17 - full reading
    GTCGGAGCCC CTGCCCCCTC TCGGGCGGCG CGGCGGGGAC CGGGGCTCAC 
    CGCGGCCATG CGCTGTTCTT GCTATCCCTC TCGTCAGTTT GTGCCCTCAC
    CCTGATGATT TCCGTTTCAC TAGCCTTGCA CTTCTTGTCT TCTTCCACTC
    AACAGGTTGG CGCTAGGTTT TGCCGATTGG GGATGAACTC GTGACGAAAT
    TGCAATGTGG GGCTCTCTCT CGGTAATGGA TTGGAGAAGT GATGAACGGC
    GAGCTTAAAC TTATGGCTTC CTATGTGAGC AAGCTTAAGT TCATCTTGCA
    AAAAGATCAG CAGCAGGAGC CCCATACTGC GAACCTTCTA GTCCTACTTG
    GGAGTAGCAA TCAGGACAAA AGAAATGGCC TCTCACAGGG AGAAAACAGA
    ATGGACACTT GTACCAGAAA GAAGCCAAGA AGATACCAAC TCCTCACCAT
    GCAACAAAAA GAAACGCTTA ATCGTGCATT TCAATCATGT CCGAACCCTG
    ATAGAAATGA CTTGAAGAAG TTGGCCAAGG AACTAAACAT GACTGAGACC
    CAAATCAAAT ATTGGTTCCA GAACTGCAGG ACAAAGATGA AGAAATTCAA
    GAACAATGAG GAGCGCAAAC TACTGCAGAA GGAGAATGAG GAGCTAAAGA
    AGGAGAATGC AGAGTTGAGA AATAGGATGA AGAACTCAAC ATGCCGCGCT
    TGTGACCTCC CTTTGTTCCA TATAGATTGC CGTCATTGGG AGAATCCAAT
    GCTCAACAAG GGTAATCATG GCGTTACAAG TAATCTCATT CCTCAGGCAG
    TGTCATCCTT GCTCCCCAGC TCAAGTGGTT TTGTAGCTTC AGGCTCCAAT
    CTTAGTAGCA ATGCTGTGCT CATGCCCGTA TCTGCCATGC CATCATCAGT
    TTTGCAGCCT GCTCCAGCCG TCTCTGGTGC CAATTTTCCC ATCTTGCACA
    ATCTATCTGC CAATGCAAAT GATGGCTATA CGGAAAAAAA CGTACTTCTT
    GATCTGGCGA ACCGTGCAAT GGAAGAGTTC TTTAGTCTAA TGAAGGAGAA
    TGAGTCTCTT CTTGTCAAAA AAAAGGAGAA TGGGCCTCTC TGGCTCCCAC
    ACATGGATAT TCTGGGAGTC GAATCACTTA ACTACCAGGA ATACCTTGCA
    AAATCCAGGA CGATTGGACA AAAACCTGTT GACTTCAAAG TGGTCGTCAC
    CAGGGACACT GCCATTGTCA ATGGTAGCTG TGTTGACCTC GTCAAAAGCC
    TTTTGGATGC TAACCGCTGG AGAGAGTTGT TTCCAGGCAT CGTGGCAAGT
    GCAAACACCA CCAAGATCAT CTCTACTGGG CCCTCTAACT TGCACGACGG
    GTTGCTTCAA TTGATGCGTG CAGAGCTCCA GGTAATGTCA CCTGAAGTCC
    CAGTTTGCGA TGTGACATTC TTGAGGCAGA GTGTGCAGTT TGGAAGTGGA
    CTGTGGTGTG TGGTTGATGT GTCTATTGAT ACCATCCTTC CTGGAGAGAG
    TAAAACAGCT CAGTCCAGTG TGCAGACCAG CAGTACAGCT GCCAGACGCA
    TGGAAGTCAG GCTGTTGCCA TCGGGCTGTG TTATTGAAGA AATGGAGAAT
    GGCTATTCCA AGGTGACCTG GATGGTGCAT GCAGCTTATG ATGAGAGAGC
    AGTGCCAGTG CTTTATCATT CACTTCTCCG CTCTGCAAAA GCCCTTGGTG
    CGTGCCGCTG GGTAGCATCA CTCCAGAGAC ACAGCCAGTT CCTTTCCGGC
    CTGCACAAAT ACATCTTTTG TCCTGACAGC ACAAAAGTGG TGATGCGAAG
    AAAAGTCCTG TACCTGGTGA AGCAGATGAC GAGCAGCTTC ACAGGCCTAT
    TTGCGTCGAT GTCTAAGGCC ACGCTGCAAG ATGGTGATGA TACTCACTTC
    GCGCATCAGA TAGTTGGTGG TGCAACAGGT GAACCTGCCG GACTGCTGCT
    GAGCGCCACC ACAACCATAT GGCTCCCCGG CGTGAACCCG AGGCACGTGT
    ATGACCACCT GCGTGATGAG CAGTGCCATG GTGAATGGCG CTGCCTCCTC
    GGTGAGCAGC TGCATCAGGG CAATGCCTTG CCGTATGGTG CCCCCCTGAA
    TGGTGAGACC GTGCCAGAGT TCTATCGCAT GGTGAACGGG CTGCATGAAG
    GGCATGCTAT CTCCCTGATC AGCCCCAGAG AAATGGGTGG TAACATAAGC
    AACACTCTGC TCCTGCAAGA GGCAAGAACT GATCTTTCTG GCTCCCTCAT
    AGTTTACGCC AGGACAGATG TGAACACCGT GCATTCCATC ATGAACAGTG
    GCCTCAACCC TGCCACCGTC TTCCTCGTAT CCTCTGGATG TGCCATTCTT
    CCTGATTGCC TGGAATCATT CCCTCTACAC CCAGCTGCAA CTGC

    Gene models with high sequence identity

    1. AT4G00730.1 [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
      E-value: 3e-79; Score: 293.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homeobox 15.742
    ProfileScan Lipid-binding START 25.265
    superfamily Homeodomain-like 1.9e-18
    Coil coiled-coil 0
    HMMSmart Homeobox 1.9e-17
    HMMSmart Lipid-binding START 2.8e-12
    HMMPfam Lipid-binding START 2.3e-31
    HMMPfam Homeobox 2.8e-17
    Gene3D Homeodomain-related 4e-15
    HMMPanther HOMEOBOX PROTEIN 1.5e-14

    See the detailed result >

    AT4G00730.1

    Model type
    Protein coding
    Short Description
    Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
    Curator Summary
    Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
    Computational Description
    ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 12660 Blast hits to 12608 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9962; Fungi - 223; Plants - 2228; Viruses - 1; Other Eukaryotes - 246 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR