K09146

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09146

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09146

Determination of introduced cDNA(s)

  • J013111E23 - Rice Full-length cDNAs - Original: J013111E23

    full reading [+] show sequence

    Nucleotide sequence: J013111E23 - full reading 
    GCGTCGCCGT GCACTGCCGC CGGCAGCCGA AGCGAGACGA AGGCGTAGCG 
    GAGATGCTCT TCTCGATCAG AAGCGGAGGA CTCGAGGTTA GCCTTGTCTT 
    CTTCTCCCCC ACCTGATTTG AGCCGCGTCC AGGAAGGGAT CCTCCACAAC 
    CGCCCAGCGA ATAGCTCGGC GCCTCGGCCA GATCTATCGC GTATTCGCGT 
    CGATCACGGT ATTGCAGTGT TCGTTAGTTT CAGACTTGTG ATCCCCTCTC 
    TTGCCAAATT TCAGAGAAGT ATTTCTAAAT GTAGTCGCAA ATTAATGGAG 
    GAGCATTTAC ATTCACGTAA AACTTTCACA GTTTCACTTG ACTCTCATCT 
    ACTGACAGAT TTCAGTTTAC TTCTTTCTAC TTGTTGGAGC AGACTGTACC 
    AACTGAAGTT CACTAGAACA TCAAAGAGTT TGGCCTTGCT AAGTGAAATG 
    TGAAAATCAC TCGAGTAAAC TACAAAATTG CATTACAGGC CACTAAGCCA 
    GAACACATGT AGAGAGCGAG AGTGTGCTCT CGTATCTCCT CGATATAATT 
    TGCTGAGTTC AATAAAAGCT TCCATTATCT TTAAAAAGAA GAAGCTAGAA 
    CACACTATTG ACTGTCTCTA TTGGAACTGC TTTAGCCAAA ATATCTGGAT 
    ATGATTGTCT GATCATATAG CACACCTATT CCAAAGAACA CACCAAATCC 
    AATTGCAAAG ACAACCTTGT CAATATACTG CTTTGTGGAG GTAGGGGAGG 
    TTGGAGCTGC TTCTGCCAAA TTGCAATGCT GTACAAGCAT TGGGCTGCAT 
    AGCTTTGGGT TACCAGCAAA ACTAGAACTT GGAAATGTGC TGAACTGGCC 
    TCCAATTGGT ACAGGCCCTT GAAGGTCATT GTAGGAAACG TTGAATTCAG 
    AAAGGAAGTG AAGGTTCACC AGTGCCGATG GGATTGCACC TGTCAGATGG 
    TTGGAAGACA GGTCTAGCCC CATCAGATTC TTGATGTCAC TGATCGATTG 
    GGGGATCTCC CCATGTAAAT TGTTGAAGCT CAAGTTGAGT GAAAGCAGTG 
    CTTTCAACTG ACCAATCTCC ACAGGGATCA GACCACTTAA TTTGTTATTA 
    CCTAGATTCA ACATTTTGGG GAATGCACTA GCTGCACGGT ACTGAAAACA 
    CAAAGATACA CCCACATAAA TTGTGAACGG GGAGACTCTT GGGCCATCTG 
    GGTGATCTTC AATCTTGTCG GATTTTAGCA TCGGCATCTC CATCAGTGCT 
    GTTGGTATGT CCCCTATAAG GCTATTATTG GATAAGTCTA TATACTTAAG 
    GAAGTTTAGG CTATTGATCC AGGTTGGTAT TGGTCCACTG AGTTGATTGT 
    TGTGTAAAAG TAGAAGTTCC AACTTTTTTA GCTTTGAGAG CCAATTAGGT 
    ATTTTTCCAG TCAGTGCGCA GTTATTTATG GCAAGAACAT GAAGATTCTC 
    AAAACCATCA ATTGTTTCGT CCTCTGGCAT AGCTTCATGT ATGAAATTAC 
    TCCCAATTAG CAAGGTAGTG GGGTTTCTTA AGCTCTTGAG TATGTGAAGT 
    GAACCTGTGA TATTTGTAAA ATTGTTGTAG GAAAGAGATA CGAAGGTAAG 
    GGATTTCAAA TTTTCTAATT TCTCCGTCAA CTGACCTTGA AGCTTATTGC 
    GAGATAACCT CAACCAAGTT AAAGTACCGC ATGAGTAGAT GCTATCTGGA 
    ATCGTGCCGG TGAAGTAATT CGAGGAAAGG CCCAAAGCTT GCAGATTGTG 
    TAGGTTGGAG AAGTTAACCT TAGAAAGCTC TCCTGCCAAC TTGTTATTTT 
    CAAGGTTGAT GGTGATTACA TTTGTGCAAT CACCCAAGGA TGATGGCAGC 
    TCCCCAGATA TGTTGTTGTT GTTCATGTGA AACTCCTGTA GTCTCTTCAG 
    CTTGCCTATA GAATCTGGTA TTGTGCCACT GAATCTGTTC CACGCAAGAT 
    CAAGAAAAAC CAGATTGCTG AGCTTTATCA TGAGTACACC ATCAATTGTT 
    CCTTGCAAAT CATTGTTAGG AAAAGAGAGG CACTCTAGTG ATGTGGCATG 
    GAAGAGATCA TCTGGGAGGG CTCCACTGAT GTTGTTGTGA CCAGCCTTGA 
    GCACTTTAAG GGCAGTGCAT TTCCCTATTC CAGGGGGGAT GCTGCCACTG 
    AACTGGTTGT AGCTAACATC AAGCATGGCG AAGGATGGCA AGCCGGTACA 
    GAAAGAGGAA GCTATCTGCC CAGTAAAACT GTTGTTGCTG GCGTTGATTG 
    CAACCAGGCT CCTCATTTTC TCCCATGTGG TGGATGGAAA TTCTCCTGTA 
    AACCTGTTGC TTGAGATATT CAGAACCTGC AGTGGCCGGT CAGATACTGA 
    TGAATTCAGC TCTTGCAGGT CCCCGTCGAG GCGGTTGAAG CTGACATCAA 
    GGACGATGAT GCTGCCAGAG GACATCAGCT CCTCAGGAAG GCCACCGGAG 
    AGCAAGTTGT AGGACAGGTT GAGGTGATGC CTTCCCACGC GCAGCAGTCG 
    ATGCCATTCC GCCACGACAT GGCGATGCCA TTGTCATGCG ATAGCCCAGC 
    AAGGAACCGG AGGAGAGAGC TCTTCTCCTG CTCAAGGCAT GCAATGGTGG 
    AGTTGGCCAT GGAGAGCAGC AGCAACAATA AGGCAGCAGC AGCGAGACCT 
    GAGAAAGGCA TCCCTAGCCT GCTTCTCCAC AGAGAATGTG GTGCCTCCTT 
    CATGATCTCT CCCATCACAG CAGTGTTTGG ACTTAGAATT TGGCAACTAA 
    TATTTGTTCG CGAAAAGTTA CACTGTTCGG TGAGGATATA TATACACAAC 
    TGAATGCATG TTTCGAACCC TGCATGTTTG

    Gene models with high sequence identity

    1. AT1G17250.1 [+] show detail - receptor like protein 3
      E-value: 9e-114; Score: 408.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 4.7e-54
    superfamily RNI-like 2.9e-52
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 5.3e-100
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.3e-100
    Gene3D no description 9.9e-41
    Gene3D no description 7.1e-39
    Gene3D no description 5.1e-27
    HMMSmart Leucine-rich repeat, typical subtype 170
    HMMSmart Leucine-rich repeat, typical subtype 160
    HMMSmart Leucine-rich repeat, typical subtype 27
    HMMSmart Leucine-rich repeat, typical subtype 61
    HMMSmart Leucine-rich repeat, typical subtype 160
    HMMSmart Leucine-rich repeat, typical subtype 160
    HMMSmart Leucine-rich repeat, typical subtype 96
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 8.6e-07
    HMMPfam Leucine-rich repeat 0.47
    HMMPfam Leucine-rich repeat 0.38
    HMMPfam Leucine-rich repeat 1.1
    HMMPfam Leucine-rich repeat 0.48
    HMMPfam Leucine-rich repeat 1.1

    See the detailed result >

    AT1G17250.1

    Model type
    Protein coding
    Short Description
    receptor like protein 3
    Computational Description
    receptor like protein 3 (RLP3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 2 (TAIR:AT1G17240.1); Has 81484 Blast hits to 24794 proteins in 958 species: Archae - 37; Bacteria - 4331; Metazoa - 15807; Fungi - 760; Plants - 53957; Viruses - 2; Other Eukaryotes - 6590 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR