K09246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09246

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09246

Determination of introduced cDNA(s)

  • J013071F21 - Rice Full-length cDNAs - Original: J013071F21

    full reading [+] show sequence

    Nucleotide sequence: J013071F21 - full reading 
    GCTTCTTCCT TCCTCCTCCT TCCCAAGGCC AAGGCCAAGA AGAAGAAGAA 
    GGGTGTGTTT AACTTTAACA CCGGGGGTGG AACGGCCGCC GGCAGCGGAA 
    GAAGATCCAG CCAATTCAAT CCAATCCAAT CCAATCCTCA GGCTGCGGAG 
    CGGAGGAATC AATTCAATGT CTTCCTCCGC CGCCTTGGCC TTGGCCTTGA 
    GGAGGGCCAC CTCCTCCGCG CACAAGCAGA AGCAGAAGCA GGCCCTCGCC 
    CTAACGGATG CCGCCGCCTC TCGAATACGC CAACTCCTCA GCCTCCGCCA 
    CAGACCCTAC CTGCGCCTTG GCGTCAAAGC ACGCGGCTGC AATGGCCTCT 
    CTTACACCCT CAACTACGCT GATGAAAAAG GCAAGTTTGA TGAGGTTGTT 
    GAAGATAAAG GAGTTAAAGT ACTAATCGAT CCCAAGGCTC TGATGCATGT 
    CATCGGCACC AAGATGGATT ATGTTGATGA CCCGCTAAGG TCTGAATTTG 
    TGTTCATCAA TCCAAATTCC AAAGGGGAGT GCGGCTGTGG TGAATCTTTC 
    ATGACTACAA GCAGCAAGGG ATCTACATCT TGAATAACGG ATAGTGATGG 
    GGGTAGTACG TGAGGTAAAC AGAGCTAAAT ATGTCGAGGC TTCAGCTACC 
    ACTTTTCTGC TTTATAGCTT ATTATTATTA CATTGGAAGT ACATAGCTCA 
    ACAGTGGTTG TAATAGATGC AATTGTGTGA ACCCACCTCA ACTGTGTTCT 
    TTACATTGGG GGGGGGGGGG TATGTGTTCT TGGTTTCTGT TGTTTGTTTA 
    CATGTGATTA ATGAAAGAAA CGAACCACGT TTGGTTC

    Gene models with high sequence identity

    1. AT2G16710.1 [+] show detail - Iron-sulphur cluster biosynthesis family protein
      E-value: 5e-47; Score: 184.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan FeS cluster insertion, C-terminal, conserved site 0
    HMMPanther HES-B 1.8e-64
    HMMPanther FeS cluster biogenesis 1.8e-64
    Gene3D FeS cluster biogenesis 2.3e-25
    HMMTigr FeS cluster insertion 3e-51
    superfamily FeS cluster biogenesis 3.3e-28
    HMMPfam FeS cluster biogenesis 1.5e-24

    See the detailed result >

    AT2G16710.1

    Model type
    Protein coding
    Short Description
    Iron-sulphur cluster biosynthesis family protein
    Computational Description
    Iron-sulphur cluster biosynthesis family protein; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster insertion, C-terminal, conserved site (InterPro:IPR017870), FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: Iron-sulphur cluster biosynthesis family protein (TAIR:AT2G36260.1); Has 10065 Blast hits to 10064 proteins in 1822 species: Archae - 41; Bacteria - 5829; Metazoa - 243; Fungi - 173; Plants - 169; Viruses - 0; Other Eukaryotes - 3610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR