K09412

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09412

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09412

Determination of introduced cDNA(s)

  • J023050B10 - Rice Full-length cDNAs - Original: J023050B10

    full reading [+] show sequence

    Nucleotide sequence: J023050B10 - full reading 
    GGGAAGCAAA GCAAGAAGCT TTTTTTACTT CTCGGGTTTG CAAGCCACCG 
    GGAAAGGCCG GGGCTTGGTG GTGGTGGTGG TGGTAAGTTT TCTTTAAAGC 
    GGCGGAGCGG GAGGCCTTCC TGGGCGCTCC GGAGATGCAG CAGCGGCGGA 
    AGTCGGTGTT CGCCTCGGCG CCGTTCGCGA TGAAGCAGGC GGCGCTGGGG 
    GCCGGCGTGG CGGCGCGCAG GAACGGCGCG CCGCTGTCGC TGGCGGCGGT 
    GGTGTTCGCG CTCTTCGTGT TCGCGACGTT CCTCTACAAC GAGGACATCA 
    AGTCCATCGC CGACTTCCCC TTCGGCGCCG GCGCGCTCCG CGCCAAGTCC 
    CCCGACCTCC ACGTCCTCCA GGAGGCCGTG GGCGCCGCGC ACCTCGCCGC 
    CGGCAGCATC GCCAAGCGCG GCGAGGAGGT CATCGTCCGT GTCCTCGACG 
    CGCCCGCCTC CACGGCGATG GCGGCCGCCG CCGGCAGCAG CAGCAACAAC 
    AGCACGATTG AGGTGGCCAA GGCCAATGCC AACGCCAACG CCAACGCCGC 
    CGACGCCGGT GTCAAGGTGG ACGAGGGGCA GGAGAGGGAG CGGGACGTGA 
    CGCTCCCGAG TGTCAAGGAA GGCGGCGCCG ACGAGGCGAG GCGGCGGGAG 
    GACGAGGAGG CCGCCGAGAA GGAGTCCTCG GCGAAGGCCG CCGCGGCGAC 
    GGCGGCGCTG CGGACCGTGG TGAGCGTGCC GGACACCTGC GACCTGTACC 
    GCGGCAACTG GGTGTACGAC GAGGTGAACG CGCCGGTGTA CAAGGAGTCG 
    CAGTGCGAGT TCCTGACGGA GCAGGTCACC TGCATGCGCA ACGGCCGCCG 
    CGACGACTCC TACCAGAAGT GGCGCTGGCA GCCGACCGAC TGCGACCTGC 
    CCCGGTTCGA CGCGAGGCTG CTGCTGGAGC GGCTGCGCAA CAAGCGGCTG 
    ATGTTCGTGG GGGATTCGCT GAACCGCAAC CAGTGGGAGT CGATGGTGTG 
    CCTGGTCCAG TCCGTGATCC CCAAGGGCAA GAAGACGCTC ACCAAGTTCG 
    TCAACGGCGG CAACAGCAAC ATCTTCTACG CACACGAGTA CAACGCGACG 
    GTGGAGTTCT ACTGGGCGCC GTTCCTGGTG GAGTCGAACT CGGACAACCC 
    GCAGGTGCAC AGCGTCCCCG ACCGCGTCAT CCAGTGGCAC TCCATCGCCA 
    AGCACGCGCA CAACTGGCTC GGCGTCGACT ACCTCATCTT CAACACCTAC 
    ATCTGGTGGC TCAACACCCT CGACATGAAA GTCCTGAAGG GGTCGTTCGA 
    CCAGGGTGCG ACGGAGTACG TGGAGGTGGA CCGGCCCGTG GCGTACAAGG 
    AGGTGCTCAA GACGTGGGCG AAGTGGGTCG ACCGCAACAT TGACCCCAAC 
    CGGACGACCG TCTTCTTCAT GAGCATGTCT CCCAACCACA TCACGCCGGA 
    GGCGTGGGGA AACTACGGAG GGATCAAGTG CGCGATGGAG ACGCTGCCGA 
    TCACGAACCG GACGACGTCG CTGGACGTGG GCACGGACTG GAGGCTGTAC 
    GCCGGGGCGC AGGAGGTGCT CCAGACGTTC CGCCGGGTGC CGGTGCACCT 
    CGTCGACATC ACGGCGCTGT CGGAGCTCCG CAAGGATGCG CACACGTCGG 
    TGCACACGCT CCGGCAGGGG AAGCTGCTCA CCCCCGAGCA GCAGTCCGAC 
    CCCAAGACGT ACGCCGACTG CATCCACTGG TGCCTCCCGG GCCTCCCCGA 
    CACCTGGAAC CAGTTCCTCT ACGCCCGCAT CGCCTCCGCC CCATGGTCAT 
    CCGACCAGTA GAAAAAGAGC AAAATAAGGC TAGCTTCCAA GTGTTCTGCG 
    AGACAAGAAA AGGAGCCAAG AACACCGTTG ACACACCATC GATGCCCGCC 
    GCCCGGCCGC GGCCACCTCA CTTTTTCTTA CTTTGGGTTA CTTTTTTTTC 
    TTCTCTTTTT TTCACCATTT TTCTTTCTTT CTCTGGGGTT GCGTAAAGCT 
    GTCTTGTGCT GTGTTTAACA TGTGATTCTT TTGTTAAAAA AGAAATGGAG 
    GGTTTAGGAT GGTGAAGGAG GATCTGTGGG CGGGCTGTGT TGACTATAGC 
    TCATTTCTTG TCCTGCTGAT AAAGGATGCA TGGATAGGAG AAAGCAAAAA 
    AAGGGTGTGA TGTGAGATGT AAGGGGGGAA AGAAAAAGGG AGGGTTACAT 
    GTAAAGAATT TTTGTGTATT ACACCATTCT AGTACATTGA TGCTCAAGAG 
    AGGTATAAAG GCC

    Gene models with high sequence identity

    1. AT3G55990.1 [+] show detail - Plant protein of unknown function (DUF828)
      E-value: 6e-140; Score: 495.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 2.7e-09
    FPrintScan PRICHEXTENSN 2.7e-09
    FPrintScan PRICHEXTENSN 2.7e-09
    FPrintScan PRICHEXTENSN 2.7e-09
    FPrintScan PRICHEXTENSN 2.7e-09
    HMMPfam Protein of unknown function DUF231, plant 5.7e-49

    See the detailed result >

    AT3G55990.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF828)
    Curator Summary
    Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    ESKIMO 1 (ESK1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 28 (TAIR:AT2G40150.1); Has 1336 Blast hits to 1309 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR