K09444

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09444

Determination of introduced cDNA(s)

J033125K07 - Rice Full-length cDNAs - Original: J033125K07

full reading [+] show sequence

GGCATCATCG CTCGCAGTCG CAGCACAAAA ACATTTCTCT CGCGAGTCGC 
GAGTTGCACC GATCGAATTA AGGGTCGAAG ATGTTTGGGT TCGGGCACCA 
CCACAACCAG GCACCGGCGG CGCCGTCGGA CCCGAACCAG ATCTTCAAGA 
TCTTCTGCCG CGCCAACGAG AACTACTGCC TCACCGTCCG CGACAGCGCC 
GTCGTCCTCG CCCCCGTCAA CCCCAAGGAC GAGCACCAGC ACTGGTTCAA 
GGACATGAGG TTCAGCACCA AGGTGAAGGA CGGGGAGGGC ATGCCGGCGT 
TCGCCCTCGT CAACAAGGCC ACCGGACTCG CCGTCAAGCA CTCCCTCGGC 
CAGTCCCACC CCGTGAAGCT TGTGCCGTTC AACCCGGAGT ACGAGGACGC 
GTCGGTGCTG TGGACGGAGA GCAAGGACGT CGGCAAGGGC TTCCGCTGCA 
TCCGCATGGT CAACAACACC CGCCTCAACT TGGACGCCTT CCACGGCGAC 
AAGGACCACG GCGGCGTCCG CGACGGCACC ACCGTCGTGC TCTGGGAGTG 
GTGCAAGGGC GACAACCAGA GCTGGAAGAT CCTCCCCTGG GGCCCCGAGG 
CTCACTCCTC CTCCCCCGGC GCCGCCACCG CCTGCACCAT CGGCGGCGTC 
CCCGTCCACA CCGTCCGCGT CTTCTCCGCC GCAGGCGAGG ACTACTGCCT 
CACCGTCCGC AACGGCACCG CCTGCCTCGC CCCCAAGAAC CCCAGGGACG 
ACTACCAGCA CTGGATCAAG GACATGAGGC ACAGCAACAA GATCAGGGAC 
GAGGAAGGCT ACCCGGCGTT CGCGCTGGTC AACAAGGTCA CCGGCGAAGC 
CATCAAGCAC TCCACCGGAC AGGGCCACCC GGTGAAGCTG GTTCCCTACA 
ACCCAGAGTA CCAGGACGAG TCTGTGCTGT GGACGGAGAG CAAGGATGTG 
GGCAAGGGCT TCCGCTGCAT CCGCATGGTG AACAACATCT ACCTCAACTT 
CGACGCCTTC CATGGCGACA AGGATCACGG CGGCATCCAC GATGGCACCG 
AGATCGTGCT GTGGAAGTGG TGCGAGGGTG ACAACCAGCG CTGGAAGATC 
CTCCCCTGGT AGATTCCGGG GAGGGGGAGC TGCATTGCAT TGCCATCGTC 
GTCGCGTCTG CTCTGCTTCT ACTCTAGCTA ATAATTTGAT CGATCTGCTA 
CCGAAATAAG ACCGTGTTCG TTCGTTCGAT CGATCGGAGT ATGGCAGTCA 
ATGGTGTCCG TCCGTCCTCG AGTTTGTGTC AGTGTGTGTC CTTTTGCGAG 
CCAGTGATTG CTATGAGATG AAACAGTGGG TGATGTAAGT GCAGGAGGAG 
GGGCCATATG ATTCAGAAAT CTGATGCAAC TCATCTTGCT TTCCCCTGTA 
CTCTCTACTT TTCGTATGCC TAATGAATGA ATTATGAATG GCTCATTTGT 
CTCGACCCTG TTGTTTCCCC TTCTTCTGTT TGTGACGTGT AATTTTGCTG 
AAAAAAAAGG CC

Gene models with high sequence identity

AT2G39050.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
E-value: 6e-56; Score: 215.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Ricin B-related lectin	5.4e-28
superfamily	Ricin B-related lectin	7.1e-26

See the detailed result >

AT2G39050.1

Model type: Protein coding
Short Description: hydroxyproline-rich glycoprotein family protein
Computational Description: hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772); Has 1708 Blast hits to 1449 proteins in 222 species: Archae - 0; Bacteria - 47; Metazoa - 514; Fungi - 386; Plants - 615; Viruses - 5; Other Eukaryotes - 141 (source: NCBI BLink).
Link: InterPro Scan - TAIR