K09601

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09601

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09601

Determination of introduced cDNA(s)

  • J023086G02 - Rice Full-length cDNAs - Original: J023086G02

    full reading [+] show sequence

    Nucleotide sequence: J023086G02 - full reading 
    GCCGCATCCG CCGTCGCCTG CGCGCCGCCG GAGGCCGGAG CCCGCCGCCG 
    TGGGATACTA GTCCAGCTTG GAAGCGGGGA GGGAGAGGCT CCAGCCAGTG 
    TGCCGAAACC TACCCTTCCA TTCTGACCCA CCACGCCATG GCGGAGCCCA 
    CGCCGCCGCT GCCGTCGAAC GCCGGGCTCC GCATCCTCCT CAGCAAGGAC 
    CGGCCACCGG CCTCCTCTTC CTCCGCGCTC GCCGCCGCCA CCTCCGCCGC 
    CGTCTCCAGC CACACCGACC GCGACCGCAT CATCGGAGTG TTCCGGGATG 
    CGCTGTCTAG GACTGAATCC CCTGAAGCTT TTGCCCTTCA GGCCGTTCAG 
    GATGCGATTA AACCTCAGAA GCAAACAGTG TTGGTTCTGG AGGAGAACCA 
    ATCCTTAGAA AATGCTCTAC GCAAATTGCT GCAGGAACTT GCATCATCTG 
    CAGTTCAATC TGGTAAAAGA ATAATGCAAT ATGGGGATAA TGAAGAAAAT 
    AATTGCCCGA TAACACGTCT TCTTGATATC GTGCTTTACC TTTGTGAAAG 
    AGGGCATGTT GAGGGAGGTA TGGTATTCCA GCTGTTAGAA GATCTGACAG 
    AAATGTCAAC TATCAAAGAC TGCAAAGATG TATTTGGATA TATTGAGAGC 
    AAACAAGATG TCTTGGGGAA GCAAGAGCTT TTCGGGCGTG GCAAGCTTGT 
    TATGCTAAGG ACTTGCAACC AACTACTTCG AAGATTATCA AAGGCAAATG 
    ATGTGGTATT CTGCGGACGT ATTATCATGT TTCTAGCACA TTTCTTCCCA 
    TTATCGGAAC GTTCAGCTCT CAATATCAAG GGGGTTTTTA ACACATCAAA 
    TGAAACAAAG TACGAGAAAG ACGCTACAGA TGGAATTTCT GTTGATTTCA 
    ACTTCTACAA TACCCTATGG AGTCTGCAGG AGCATTTTAG TAACCCTGCT 
    TTAACTGCTG CAAATCTGAC AAGATGGCAA AAGTTTGTGT CCAATTTAAC 
    GGTTGTGCTA AGCACATTTG AAGCTCAGCC TCTCAGTGAC GATGATGGAA 
    AACTTAACAA TCTTGACCAA GAGGAAGATG CTGCTTTCAA TATTAAGTAC 
    CTGACAAGTA GTAAATTGAT GGGTTTGGAG TTGAAGGACC CAAGTTTTCG 
    ACGCCACATC CTTGTCCAGT GCCTCATATT CTTCGACTTT CTCAAGGCAC 
    CTGGAAAGAC TGACGAAGAA GGTCCAACTG GGAGCATGAA AGAGGAAATC 
    GATTCTTGTG AAGAGCGTGT TAAGAAACTT CTGGAGATAA TTCCACCAAA 
    AGGGAAGGAC TTCCTACAAA GCATCGAGCA TATTCTTGAG CGGGAGAAAA 
    ATTGGGTATG GTGGAAACGA GATGGGTGTC TAGCGTTTGA AAAACAACCT 
    TTTGAAAAGA AACCAGGCCA AGCTGGAGTC AGAAAACGTA AGCCAAGGTG 
    GAGATTGGGA AACAAAGAAC TTGCCCAACT GTGGAAATGG GCTGAACAAA 
    ACCCTAATGC TCTGACTGAT TCTGAACGTA TTTGCATGCC ATCAGTAACA 
    GAATATTGGA AACCACTTGC AGAAGATATG GATCCATCTG CTGGTATTGA 
    GGATGAATAT CACCACAAGA ATAATCGTGT GTATTGCTGG AAAGGGTTAC 
    GATTTTCAGC CAGGCAGGAT TTGGAAGGTT TTTCTCGGTT TTGTGATTAC 
    GGTATTGAAG GAGTTGTACC TCAAGAACTG TTGCCACCTG AAGTCCGTTC 
    CAAGTTTTAT TCGAAGCCTG GTGACAAGGC TAAACGACCT AAGAGGGAAG 
    ACCCAAAAGG CACTTCAGCC CAACCCAAGG AACAACAGGT TGTTTCAGCC 
    ACACCGGAGA CCGACGGTGG CGGTAGCGGG GCTGAACCAG AAGAAGGTGC 
    TGTGCCAATG GATTCTGATA ATGCCGCGAT CGATGAAGGC CGGAAGCAGA 
    GCCCAGAGGA GGTGTCTGGA CCTGAAAGCG GGCAGTGCGA GGCTGAAGCC 
    GATGGCGAAG ATAACATGAA AAATGAGGCT AGTAAAGACG GTCCATCCGC 
    ATAGAACCTC TGCCGGAAGA TTTTGTAGTA TCCTGTTGCC GACGTTTCTA 
    CTGAGATCGC CCATCTTTAG AGTTACTGTG ACCCCCCAGA TTGAGACATC 
    CAGGCTCCAG ATTGTTTTAA AGAAGATAGA GAGACATGTA TCTAGTCCAC 
    TGAACACAGA ATTTTAATGA ATCATCAGTA GCTGACGCCA TGCCTTAGCC 
    TGACATGTGT ATATAGACAG CTTGTTCGTT GAAGTGTTAT CTTGCATCCT 
    GGGTCCCCTC CTGTGTGTGT TTACTGTTCG GTGTAGCATA CTGCTTGGAG 
    TACACTATAG GAGTACTAGT ATGTATCAAG CTCAATTTAC CGTACCAGTT 
    TATGGTG

    Gene models with high sequence identity

    1. AT5G09860.1 [+] show detail - nuclear matrix protein-related
      E-value: 0; Score: 788.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther THO COMPLEX SUBUNIT 1 9.2e-147
    HMMPfam THO complex, subunit THOC1 2.8e-50
    HMMPfam THO complex, subunit THOC1 1.1e-65

    See the detailed result >

    AT5G09860.1

    Model type
    Protein coding
    Short Description
    nuclear matrix protein-related
    Curator Summary
    Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.
    Computational Description
    THO1; CONTAINS InterPro DOMAIN/s: THO complex, subunit THOC1 (InterPro:IPR021861); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR