K09846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09846

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09846

Determination of introduced cDNA(s)

  • J013064A22 - Rice Full-length cDNAs - Original: J013064A22

    full reading [+] show sequence

    Nucleotide sequence: J013064A22 - full reading 
    GCCCGAACCC TAACTCCATC TTCCCCGGCG GCGGCGCAGC AGAGGATATC 
    AGCCATGGTG AAGTTTCTCA AGCCCGGGAA GGCGGTGATC CTGCTGCAGG 
    GGAGGTTCGC GGGGCGGAAG GCGGTGATCG TGCGGGTGTT CGAGGAGGGC 
    ACCCGCGACC GCCCCTACGG CCACTGCCTC GTCGCCGGCC TCGCCAAGTA 
    CCCCAAGAAG GTGATCCGCA AGGACTCGGC GAAGAAGACG GCGAAGAAGT 
    CGCGCGTCAA GTGCTTCCTC AAGCTCGTCA ACTTCACCCA CCTCATGCCC 
    ACCCGCTACA CCCTCGACGT CGACCTCAAG GAGGTCGCCG CGGGGCCCGA 
    CGCGCTCGCC ACCAGGGACA AGAAGGTCGC CGCCTGCAAG TCCGCCAAGG 
    CGCGCCTCGA GGACCGCTTC AAGACCGGCA AGAACAGGTG GTTCTTCACC 
    AAGCTCCGCT TCTGAGCTCT CTCCTGCGGC GGCGGCGGCG GCGATGGGAT 
    GGTACTGGTG CACGGCCATC TCATCCTTTT TCTCTTTTTC TAAAGCTTTT 
    CGCTTTCTGA GTAGCAGCCA ATGAATGGTT TTGGATTTTC TAAATTAATC 
    TCAATCACCC TGATGTAATG GTACTACTGC CTGCTTGTGT GGGTGTGGAT 
    GTTTAGTAGT ATGGATCTAT TAAAGAAGCA TATTGGGAGA CGTTCTGTGT 
    CAATTTTTCA CTGGTTATGG TCC

    Gene models with high sequence identity

    1. AT4G15000.1 [+] show detail - Ribosomal L27e protein family
      E-value: 3e-59; Score: 225.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart KOW 0.00082
    HMMPanther Ribosomal protein L27e 1.5e-76
    BlastProDom Ribosomal protein L27e 3e-38
    PatternScan Ribosomal protein L27e, conserved site 0
    HMMPfam Ribosomal protein L27e 6.8e-31
    HMMPfam KOW 1.2e-05

    See the detailed result >

    AT4G15000.1

    Model type
    Protein coding
    Short Description
    Ribosomal L27e protein family
    Computational Description
    Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1); Has 764 Blast hits to 764 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR