K10217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10217

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10217

Determination of introduced cDNA(s)

  • J033067A05 - Rice Full-length cDNAs - Original: J033067A05

    full reading [+] show sequence

    Nucleotide sequence: J033067A05 - full reading 
    GACAGTCCCA CACGACTCCT CCGGTCCTCC CATCCTGACC CAACCGCTGC 
    TGCTCCAGCA TGCGCATCCT CCGGGGAATC CTCGCCGTCT CCGGCCACCT 
    CGCCGGCCGC CGCGCGCCGG CGAACAACGC CCACCTGGCA CTCTTCTCCC 
    GCGCCCTCCA AATCCTCGCC CAGCAGGAGC CCGTCCGCCT CCAGAAGCTC 
    TCGGCGCCCG ACTCCGGGAT CGTGGAGATG AGGCTGGAGC GGCCGGAGGC 
    CAGGAACGCC ATCGGGAGGG AGATGCTCCA GGGGTTGCGG AGCGCGATCG 
    AGAAGGTGAA GGCTGACGCG ACGGCGAAAG TCGTGCTGCT GGCGAGCTCC 
    GTCCCGAAGG TTTTCTGCGC TGGCGCTGAT CTCAAGGAAA GGAGGTTAAT 
    GAGCCCTTGC GAAGTTCGCG AATTTGTCAA TTCCCTAAGA TCTACATTCC 
    TGTCCTTTGA GGCATTGTCA ATTCCTACAA TTGCCATTGT TGAGGGAGCT 
    GCTTTTGGCG GTGGGTTAGA ATTGGCTCTT TCTTGTGATC TCCGTATATG 
    TGGGGAAAAT GCAACATTTA GCTTGCCAGA AACTGGCCTT GCTATTATTC 
    CTGGAGCTGG GGGAACGCAG CGTCTTCCTA GGATTGTTGG AAAGTCCAGA 
    GCAAAGGAAT TAATATTCAC TGGTCGTAGA TTCGATGCAG TAGAAGCTGT 
    AACCATGGGA GTAGTAAACT ACTGTGTTCC CGCTGGGGAG GCTTATAAAA 
    GGGCTCTTGA ACTTGCCCAG GAGATAAATC AGAAAGGTCC GTTAGCGATA 
    AGAATGGCTA AGAAGGCCAT CAATCAAGGC ATGGAGGTAG ATCTGTCCGC 
    CGGATTGGCT GTCGAAGAAG AATGCTACGA GCAAGTTCTG CACACTCAAG 
    ATCGTCTTGA AGGTCTAGCT GCATTTGCTG AGAAAAGGAA ACCTGTATAC 
    ACAGGGAAAT AAGGTTGTAA ATGGTGTTAA AATTGCAAGT TGCTTTCAAT 
    TGAGCTTCTC ACATCCAGAA GGGTTGAGCA GGTTATTTTT AGACTTTCTA 
    CTGTGTTCAT ATCTTTCTCC ATACATGTAA GAAGAACAAG ATACATCTGC 
    CAATTCATGC TACATTTTAT CAAGTTAATA AGGTTAC

    Gene models with high sequence identity

    1. AT4G16800.1 [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
      E-value: 3e-90; Score: 328.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ENOYL-COA HYDRATASE-RELATED 3.9e-67
    Gene3D no description 2e-71
    HMMPfam Crotonase, core 6.4e-50
    PatternScan Enoyl-CoA hydratase/isomerase, conserved site 0
    superfamily ClpP/crotonase 5e-81

    See the detailed result >

    AT4G16800.1

    Model type
    Protein coding
    Short Description
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    Computational Description
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: enoyl-CoA hydratase activity, catalytic activity; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (TAIR:AT5G43280.1); Has 38027 Blast hits to 38009 proteins in 2336 species: Archae - 484; Bacteria - 24986; Metazoa - 1599; Fungi - 771; Plants - 617; Viruses - 0; Other Eukaryotes - 9570 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR