K10234

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10234

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10234

Determination of introduced cDNA(s)

  • J033067D07 - Rice Full-length cDNAs - Original: J033067D07

    full reading [+] show sequence

    Nucleotide sequence: J033067D07 - full reading
    GAGCTGATAA TTAAAAGAGA GAAAAAAAAA AACTCGCCCC GTCGTTCCCT 
    CCTCAGCTCC TCTCCCCTCG GAAGTCGAAA CCCTAAGAAA CGCGTAGCGA
    AGGCGAGGCT CCCGAGAGAG AGAGAGAGAG CCATGGCGGT GGCGGCGCCG
    GGGCAGCTGA ACCTCGACGA GTCGCCGTCG TGGGGCTCCC GCAGCGTCGA
    TTGCTTCGAG AAGCTCGAGC AGATCGGCGA GGGCACATAC GGGCAAGTGT
    ACATGGCGAG GGAGACGGAG ACGCAGGAGA TCGTCGCGCT CAAGAAGATC
    CGCATGGATA ACGAGCGCGA GGGCTTCCCC ATCACTGCAA TCCGCGAAAT
    CAAAATCCTC AAGAAGCTGC ACCACCAGAA CGTCATCCAG CTCAAGGAGA
    TCGTCACCTC GCCAGGACCG GAGAGAGATG AGCAGGGGAA ACCAATCCAT
    GGTAACAAGT ACAAGGGGAG CATTTACATG GTCTTCGAGT ACATGGACCA
    TGACTTGACT GGGTTGGCAG ATAGGCCTGG GATGCGTTTC ACCGTGCCGC
    AGATTAAGTG TTACATGAAG CAACTCCTTA CAGGCCTTCA TTATTGTCAC
    ATTAATCAAG TTCTGCATCG TGATATTAAA GGATCCAATC TCTTGATAGA
    CAATGAAGGT AACTTGAAGC TGGCTGATTT TGGCCTAGCA AGATCATTTT
    CAAATGATCA TAACGGAAAT CTCACTAATC GTGTGATCAC TTTGTGGTAC
    AGACCTCCAG AGTTGCTGCT CGGAAGCACC AAGTATGGAC CAGCAGTTGA
    CATGTGGTCT GTCGGTTGTA TTTTTGCAGA GCTTCTCAAT GGAAAGCCAA
    TTCTGCCAGG AAAGAATGAG CCAGAGCAAC TGAGCAAAAT ATTTGATGTT
    TGTGGCACAC CTGATGAATC AAACTGGCCG GGTGTCACAA AAATGCCTTG
    GTACAACAAT TTCAAGCCTC CCCGCCAACT GAAGAGACGT GTAAAGGAGT
    ACTTTAAGCA TTTTGACAGG CTTGCTCTGG ATCTGCTTGA AAAGATGTTA
    ACACTAGATC CAGCACAGAG GATATCAGCA CAAGATGCAC TTGATGCAGA
    GTATTTCTGG TCTGATCCCC TACCATGTGA TCCTAAAAGC TTGCCAAAGT
    ATGAATCTTC ACACGAGTTC CAGACCAAGA AAAAACGCCA ACAAATGCGT
    CAAGCCGATG AAGCTGCGAA GAGGCAAAAG ACACAACATC CTCAACCACA
    TGGCCGTTTG CCTCCAATTC AACAAACAGG ACAGCCCCAT CCTCAAATCA
    GACCAGGCCA GCCGATGAAC AACCCCCATG CGCCGATGGC TGCTGGGCCA
    GGCCATCACT ATGCAAAACC CAGAGGGCCA GGAGGCTCAA GCAGGTATCC
    ACAGGGTGGG AACCAAGGTG GAGGATATCC GAACCGCGGC GGACAAGGTG
    GTGGTGGCAG CTATGGAAAT GCCCCTTACC CTCAACAAGG TCGAGGGCCG
    CCGCCACCGT ACCCTGGCAG TGGAATGGCC GGAACAGGTG GCCCAAGGGG
    TGGCGTTGGT GGTGGCTATG GAGGAGGATC AAATTATCCC CAGCAAGGCG
    GCCCATATGG TCCTTCTGGC CCAGGCCGAG GGTCAAATTA TCCCCAACAA
    GGTGGTTCTC GCAACCAGCA GCAGTACGGA AACTGGCAGT AGTACGTTAC
    CTAAACTCAG CAACACTATG CCAATTGTCT TAAACTCTGA TGTTGATGCT
    AACTTGTGCT TAATCTATTC TATTGGGCAT TACATTTTGT TAGAGCGTGT
    ATTGCCCTGA ATCCAGTAGG AATTGTAGCA ATGTTGTTCG TTTTGATTAA
    AGAATGATAA GAGATACACA AATTGAGC

    Gene models with high sequence identity

    1. AT5G10270.1 [+] show detail - cyclin-dependent kinase C;1
      E-value: 0; Score: 705.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 5.2e-89
    ProfileScan Protein kinase, catalytic domain 45.022
    HMMPfam Serine/threonine-protein kinase-like domain 6.9e-73
    Gene3D no description 2.3e-13
    Gene3D no description 3.5e-69
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 7.5e-97
    HMMSmart Tyrosine-protein kinase, catalytic domain 7.5e-10
    HMMPanther CYCLIN-DEPENDENT PROTEIN KINASE-LIKE 1.1e-158
    HMMPanther CDC2, MAP KINASE-RELATED 1.1e-158

    See the detailed result >

    AT5G10270.1

    Model type
    Protein coding
    Short Description
    cyclin-dependent kinase C;1
    Curator Summary
    Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development.
    Computational Description
    cyclin-dependent kinase C;1 (CDKC;1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to virus, leaf development; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin dependent kinase group C2 (TAIR:AT5G64960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR