K10237

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10237

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K10237

Determination of introduced cDNA(s)

  • J033068J20 - Rice Full-length cDNAs - Original: J033068J20

    full reading [+] show sequence

    Nucleotide sequence: J033068J20 - full reading 
    GTGCGAGGAG GAGAAGATGC CACCGCCCGT GCCGCCGGAG GAGCGGCGGA 
    AGCCTTCGCC GGCGGAGTCC CGCCAGTGGA CGCAGCGCTT CTTCCAGGTC 
    CTCGGCGCCG GGGAGCCCCT ACCGGCCCCC GCGGAGCTCC CCGCTGCCTA 
    CTCCGCGCTC GTCCGCGGCG TCCTCTCCTC CGCCGCCGTC TCCTCCTCCG 
    CCTCCCCGCG CGTCTCCTGC ACGCTCACCG TCTCCCCCGC CGCCGTTAAC 
    GGGTACAACA CGCTCCACGG CGGCATGGTG GCGGCCGTGG CGGAGGCCGT 
    CGGGATGGCG TGCGCGCGCG CCGCGGCCGG CGACAAGGAG ATGTTCCTCG 
    GCGAGCTCAG CACCGCCTAT CTCTCCGCCG CCCGACTCAA TTCCGAAGTG 
    GAAGTTGAAG CGCAGATACT CAGGAAGGGC AGATCCGTGG TGGTTACTAC 
    GGTTGAGTTT AGGCTCAAGG ATACCAAGAA GCTCTGCTAT TCATCTCGAG 
    CCACCATCTA CATCATGCCT GTGGTGAGCC TGTGAAAAAC CACATGGTAC 
    GTGGATGACC AAGTGTTTGT TTACACAACA ATTACTGTGT AGTATATATA 
    TGTGCATATA TAGCAAATCT ATATATGCCA CATTCACAAA CATAGATGAG 
    AACATTATCA TATGCCTATC CAGCAACCTT CCAAAGCTCA GATGCCTTGA 
    AAGGCTTCCC TTTAAGTTCC GCATCCTTGT TATTTTCACT TGGAACTTCA 
    GCCAACAATG AATGTATGTT AGTCAGGACA TCCAGACAAG AAGTATATAA 
    AAGATTAAAC CATGCGAGCT AGTATATGAT ACAGTTCTGT TTTC

    Gene models with high sequence identity

    1. AT3G61200.1 [+] show detail - Thioesterase superfamily protein
      E-value: 3e-14; Score: 75.90

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.5e-10
    HMMPanther THIOESTERASE SUPERFAMILY MEMBER-RELATED 3e-18
    superfamily Thioesterase/thiol ester dehydrase-isomerase 1.6e-18
    HMMPfam Thioesterase superfamily 2.5e-13

    See the detailed result >

    AT3G61200.1

    Model type
    Protein coding
    Short Description
    Thioesterase superfamily protein
    Computational Description
    Thioesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT1G04290.1); Has 296 Blast hits to 296 proteins in 69 species: Archae - 1; Bacteria - 37; Metazoa - 61; Fungi - 14; Plants - 161; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR