K10503

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10503

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10503

Determination of introduced cDNA(s)

  • J023140B02 - Rice Full-length cDNAs - Original: J023140B02

    full reading [+] show sequence

    Nucleotide sequence: J023140B02 - full reading 
    GAGGCACGCA CAGGGAAGCA ATAGCAACGA ATTCAACCAA CCAACCAACC 
    AACCCTTCTG CTGCTTCAAT CGATCGGCAA CAAATCTTTC TGGGTGGTCT 
    GGTGCTCAAC TCCCCCATCG CCATTTTATG CCCGAACCTG TTTCTCCAGC 
    CAATTTGATG AGGATTAATT TCCAAACGGG CTCCGATCGA TCTCCATGAT 
    TAACCATCCG GCGTGGTGAT GAGCCGCCGC CGCCGCATCG TCGTCGTCTC 
    CCGATGCATC GCCAGGACGT GAGGACGAAG GAGGCCGAGG AGGAGAGGAT 
    GGAGGAGAAC AATCTCCTGC ATTTTCTAGA TAGCCCAAAC GCGCATTACA 
    GAAGGAAATG TGAAGAATAC GTATCCGCGC ATGATGATGA AGCCCATTGC 
    GATGCATCAG ATGTAGATCT GGCCAATGCA AGGGAAAGAT TGGAGCATCT 
    GTTGAAACAA CCTGCCAACA AGTTCTGTGC AGACTGTGGT ACCCCTGATC 
    CAAAATGGGC GGCCTTGCCT TTTGGTGCGT TGATTTGCAT AAAGTGCTCT 
    GGAACTCATA GAAGTCTTGG AGTACACATA TCAAAGGTAA TTTCCGTGAA 
    TCTAGACGAA TGGACAGATG AAGAGGTCAA TTGTTTAGCT GGTTCAGGTG 
    GAAATGCTAC GGTGAACACA AGATATGAGG CCTTTTTGCC AGAGAACTTT 
    AAAAAGCCCA GACATGATTG CACAACAGAG GAGCGTTGCA ATTTCATTAG 
    GAAAAAGTAC GAGTTTCAAC AGTTTGTGAC TGATCCACAG TTTTCATGCC 
    CTTTACGATT GAATACCAAA CACGCACCAG ACAAGAATCA GCAGCAGCAA 
    AACTGCAGTG CGCGACATGG TTTTGGCCAT GCTTTTAGGA ATAGCTGGAA 
    GAGAAAGGAC ACAGATAACA AAGGACTAAA GAAAATGACG GATGTGGGTA 
    TGGTGGAATT TGTTGGATTA ATTAAGGTTG ATATTAGACG GGGCACAAAT 
    CTTGCTGTTC GTGATGTGAT GTCAAGTGAT CCATATGTTA TGCTTAACCT 
    AGGACACCAA ACCATGAAAA CGAAGGTGAT AAAGAACACC CTGAATCCTG 
    TATGGAATGA AAGACTAATG CTATCGATCC CTCACCCGGT GCCGCCTCTT 
    AAATTGCAAG TGTTCGACAA GGACACGTTC AGCTCCGACG ACCGGATGGG 
    CGATGTGGAG GTGGACATCC AGCCGCTGAT CGCCGCGGCG CGAGAACACG 
    AGAGCTCGGC CGCCATCGCC GGCTCGGTGG AGGTCACGAA GCTGCTGGCG 
    AGCGACGACG GCACGCTGGC CAGGGACAGC GTCATCTCCG TCGTCGACGG 
    CAAGGTGAAG CAGGACATCG CGCTGAGGCT CCAGAACGTG GAGCACGGGG 
    AGCTGGAGAT CGAGCTCGAG TGCGTGCCGC TCAGCCAGTA GTATAGCTAT 
    AGCTGCTGTA CACATTTTAT TGCTACTATA GCTGGCCGGG ATGAAAAATG 
    CTCGATCTGC ATTCGCTGTG GGTTGTGTGA TCATATGCAT GGAGCTTAAT 
    TTGCTTCTGT GTTTTACTCC

    Gene models with high sequence identity

    1. AT3G07940.1 [+] show detail - Calcium-dependent ARF-type GTPase activating protein family
      E-value: 9e-113; Score: 404.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Arf GTPase activating protein 5.4e-18
    FPrintScan Arf GTPase activating protein 5.4e-18
    FPrintScan Arf GTPase activating protein 5.4e-18
    superfamily Arf GTPase activating protein 2.3e-39
    superfamily C2 calcium/lipid-binding domain, CaLB 6.8e-28
    ProfileScan C2 membrane targeting protein 15.651
    ProfileScan Arf GTPase activating protein 25.27
    HMMSmart Arf GTPase activating protein 9.7e-36
    HMMSmart C2 calcium-dependent membrane targeting 1.2e-18
    HMMPanther CENTAURIN/ARF-RELATED 7.8e-109
    HMMPanther CENTAURIN/ARF 7.8e-109
    Gene3D no description 4.8e-20
    HMMPfam Arf GTPase activating protein 2.9e-35
    HMMPfam C2 calcium-dependent membrane targeting 1.7e-20

    See the detailed result >

    AT3G07940.1

    Model type
    Protein coding
    Short Description
    Calcium-dependent ARF-type GTPase activating protein family
    Computational Description
    Calcium-dependent ARF-type GTPase activating protein family; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent ARF-type GTPase activating protein family (TAIR:AT4G21160.4); Has 9376 Blast hits to 8361 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 5295; Fungi - 1386; Plants - 1701; Viruses - 0; Other Eukaryotes - 994 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR