K10506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10506

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10506

Determination of introduced cDNA(s)

  • J023023M22 - Rice Full-length cDNAs - Original: J023023M22

    full reading [+] show sequence

    Nucleotide sequence: J023023M22 - full reading
    GTCCCATCCT CCCCACCCCC CAAGCGGCGG CGAGACCAAA TCCCCCACTT 
    CTCTCTCAAT CTCTCTCTCT GCTAGGGTTT ATCCCTCCGC GCCGCCGCCC
    CCGGAAGACG AGAGAGCGCC ATGGCCGGCG GTCCCGCGGC GGTGTCGTTC
    CTGACCAGCA TCGCCAAGGC GGCGGCGGGG CTCGGCGCCG CGGCCTCCCT
    CCTGTCGGCG TCGCTCTACA CCGTCGACGG CGGCGAGCGC GCCGTCATCT
    TCGACCGGTT CCGCGGGGTG CTCCCGGAGA CCGTCGGCGA GGGGACCCAC
    TTCCTCGTGC CGTGGCTCCA GAAGCCCTTC GTCTTCGACA TCCGCACGCG
    CCCCCACAAC TTCTCCTCCA ACTCCGGCAC CAAGGACCTG CAGATGGTCA
    ACCTCACCCT CCGCCTCCTC TCCCGCCCCG ACGTCGTGCA CCTCCCCACC
    ATCTTCACCT CCCTCGGCCT CGAGTACGAC GACAAGGTGC TCCCCTCCAT
    CGGCAACGAG GTGCTCAAGG CCGTCGTCGC GCAGTTCAAC GCCGACCAGC
    TCCTCACCGA GCGGCCCCAC GTCTCAGCCC TCGTCCGCGA CGCCCTCATC
    CGCCGCGCCC GCGAGTTCAA CATCATCCTC GACGACGTCG CCATCACCCA
    CCTCTCCTAC GGCATCGAGT TCTCGCAGGC CGTCGAGAAG AAGCAGGTGG
    CGCAGCAGGA GGCCGAGCGC TCCAAGTTCC TCGTGGCCAA GGCTGAGCAG
    GAGAGGCGCG CGGCCATCGT GCGCGCGGAG GGAGAGAGTG AGTCCGCGCG
    GCTCATTTCT GAGGCCACCG CCGCCGCTGG GACAGGGCTG ATTGAGCTGA
    GGAGGATCGA GGCGGCCAGG GAGATTGCTG CCGAGCTGGC CCGTTCTCCT
    AATGTTGCAT ACGTTCCTGC TGGGGACAAT GGCCGGATGC TGCTCGGCCT
    CAACGCTGCC GGGTTCGGCC GGTGATCCGT CACTCCAATT TTACCCCTTT
    AGTTGCCCAG GCAACCGCTC TGTGTTACAT TAAACTGGAA TGATGGTATG
    GGGAATTATG TTATCTGCTA CTTTTGGTAA TATTTAGTCT GGATGTCTTT
    GAACGGAATG TGCTAATCTT TGTGATCCAA ATAAGTTCTG GGTCTAAGAC
    TCATTTATGT TTTACG

    Gene models with high sequence identity

    1. AT5G40770.1 [+] show detail - prohibitin 3
      E-value: 6e-100; Score: 361.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    HMMPanther Prohibitin 3.7e-169
    Coil coiled-coil 0
    HMMPfam Band 7 protein 7.1e-23
    HMMSmart Band 7 protein 3.8e-41

    See the detailed result >

    AT5G40770.1

    Model type
    Protein coding
    Short Description
    prohibitin 3
    Curator Summary
    prohibitin 3
    Computational Description
    prohibitin 3 (PHB3); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 4 (TAIR:AT3G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR