K10551

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10551

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10551

Determination of introduced cDNA(s)

  • J013023N16 - Rice Full-length cDNAs - Original: J013023N16

    full reading [+] show sequence

    Nucleotide sequence: J013023N16 - full reading 
    CTTGCATAAA AGAAAATCCC CCGTCTCGTC TCCTCCGCTC CTTGTGCCTG 
    CGCCCATCGA CTCCATCTGG CGACTCGCGA GAGCAGAGCA GGGGAGGGGG 
    AGGGGAAGGG CGCCGTCGTC CTGTTGTTCA CTCCTGACCT GCATCACATC 
    TGGAGATGTC TTTCCGCAGC ATAGTTCGTG ATTTCAGGGA CAGTTTCGGG 
    ACTCTATCCA AGCGGAGTTT CGAGGTGAAA ATTTCAGGCT TTTCGGGCCG 
    TCACAGAGGG AAATCCATTG GACCATCAAG CGAGCTGGAT GACACGCCCG 
    TGGTAGCTCA GCAAAGCAAG TGGGCTGGTC TTCCTCCTGA ATTACTTCGC 
    GACGTGATGA AAAGGCTGGA GGAAGATGAT AGCAATTGGC CCTCCCGCAA 
    GGATGATGTT GCCTGCGCTT CAGTTTGTAC GACTTGGAGA GACATGTGCA 
    AAGATATTGT CAGGAACCCT GAATTTTGTG GAAAGCTTAC ATTTCCAGTG 
    TCTCTTAAGC AGCCTGGACC TCGAGATGGA GTAATCCAAT GTTTCATAAA 
    AAGGGACAAA TCAAAACTAA CTTATCATCT CTACCTGTGC CTTAGCTCTG 
    CTGTGCTTGA TGAGACTGGA AAGTTCCTAC TATCAGCTAA AAGGAGCCGG 
    CGAACGACAC ACACTGACTA CATCATTTCT ATGGACTCCA AAAATATCTC 
    CCGATCAAGT AGTGGCTATA TTGGGAAGTT GAGGTCAAAT TTCCTCGGCA 
    CCAAATTCAT CATCTATGAC ACGCAGCCTC CATACAATGC TCGGACACTT 
    TGCTCACAAG AACGGACGAG CCGTCGGTTC TCCTCTAGGA AAGTTTCCCC 
    AAAAGTTCCA ACGGGTTGTT ATCCCATCGT GCAGGTGAAT TATGAGCTAA 
    ATGTGCTTGG AACCCGGGGA CCAAGACGGA TGCAATGCGC TATGCATTCC 
    ATCCCAGCAT CAGCAGTAGA GCCTGGTGGC ATTGTGCCTG GCCAACCTAA 
    AGAGCTCCTC CCAAGGTTAT TTGAGGAGTC CTTCCGCAGT ATGGCAACTT 
    CCTTCTCCAA GTACTCCATC ACAGATCATT CGACAGACTT CAGTAGTTCT 
    CGCTTCTCTG AGTTTGGGGG AGGGGCTCTG CAAGGGCAAG AGCAAGAGCA 
    AGATGGCGAT GATGTGAACA AGGAGAGGCC TTTGGTTCTC CGGAACAAAG 
    CACCAAGGTG GCATGAACAG CTGCAATGCT GGTGCCTCAA CTTCCGTGGC 
    CGTGTGACGG TGGCTTCAGT GAAGAACTTC CAGCTGATAG CTGCTGCACC 
    TCAGCCATCT TCTGGAGCCG CCTCTGAACC TTCACAGGCA GGGCAGGCTG 
    CACAACAGCA AACCCAACCT TCTCAGCCAT CGAGTTCGTC GTCGTCGTCA 
    TCATCCAACC ATGATACGGT GATCCTGCAA TTCGGCAAAG TTGCAAAGGA 
    CATGTTCACC ATGGATTACC GGTACCCATT GTCGGCCTTC CAGGCTTTTG 
    CTATCTGTTT GACCAGCTTT GACACCAAGC TGGCATGTGA ATAAATGAGT 
    AGAATAGCGA TCAGAAAGCA CTCCAGTGTA CCTGAGGACC TAAGCCACTC 
    CAGGCGTATG GTATTTTAGG ATAGGAGAAT TCTGTGTCTA GTCACTTGTG 
    TGTATTCATG TGCAGTTCTT TGGTTGAATC CTTGTGTTCC TCCGGCGTGC 
    GTGTTTGTTA GAAGTGTAAA AAGGGGATTG AAGTGTAGAT GTCTGTAAGA 
    TAGAACAAGA TCTTGTTTCT TGTATGTTGG GCTTAAAAAG TTTTGAGCAA 
    GAGAATGAAT GAATGGTTGA GGGAGC

    Gene models with high sequence identity

    1. AT1G25280.1 [+] show detail - tubby like protein 10
      E-value: 2e-148; Score: 523.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Tubby, C-terminal, conserved site 0
    PatternScan Tubby, C-terminal, conserved site 0
    HMMPanther TUBBY-LIKE PROTEIN 2 2.3e-183
    HMMPanther TUBBY-RELATED 2.3e-183
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    FPrintScan Tubby, C-terminal 1.2e-76
    superfamily Tubby, C-terminal 2.2e-105
    HMMPfam Tubby, C-terminal 6e-119
    HMMPfam F-box domain, cyclin-like 1.4e-08
    Gene3D Tubby, C-terminal 6.2e-99

    See the detailed result >

    AT1G25280.1

    Model type
    Protein coding
    Short Description
    tubby like protein 10
    Curator Summary
    Member of TLP family
    Computational Description
    tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 961 Blast hits to 946 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 21; Plants - 475; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR