K10615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10615

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10615

Determination of introduced cDNA(s)

  • J023143J09 - Rice Full-length cDNAs - Original: J023143J09

    full reading [+] show sequence

    Nucleotide sequence: J023143J09 - full reading 
    GACGAGCGCA CGATCCTCCC CTCCGCCGCC GGCCTTGCTT CTTCCCCATT 
    CCTGCTCTTC GAGGCGTTTT TTAACTTCAC AATGAAGCTG ATCGCTGCCT 
    ACCTGCTCGC TGTTCTGGGT GGAAACACCT CTCCATCTGC TGATGACATT 
    AAGAACATTC TGGAATCAGT TGGCGTTGAA GCTAATGACG AGAGGCTGGA 
    GTTCCTGCTC TCAGAACTGG AGGGCAAGGA CATAACAGAA GTGATTGCTG 
    CTGGAAGGGA GAAGTTTGCT TCTGTGCCCT CAGGTGGTGG TGGTGGCATA 
    GCTGTGGCAG CTCCTACAGC TGCAGGTGGC GGTGCAGCAC CTGCTGAAGA 
    GGCAAAGAAA GAGGAGAAGG TCGAAGAGAA GGAAGAGTCT GATGATGACA 
    TGGGTTTCAG CTTGTTTGAC TAAGTACCTT CGGCTGCATA TTTACCCCCG 
    TTCACCCCAG TATCTTTCTG CATTGCTTGC TTTATCACTA TGTGTGCAAA 
    AATGAGCAAT GTGATGGCTC TATGTGTTTC TGCTATTTTT TGGTCGAGAC 
    TGTATATGTC TAGTATCCTA AGAAGTTTAA TGTAAAATTT CAGGGAACTG 
    GTCAAAACAT GTAATGTTTG CTATCGTGAG TTAGCATTAT CTACTCTCAC 
    CGCAATGTGC TCTGCTTTTT TTTGTTTTAT TTGGATGACG CTAAATTGGT 
    TCGTCATCAA TTAAATAACC CTAGAATCCT GGAAAACGCT CACGATGATG 
    AATCAGAAGC TGTTGCTCGG TGGAGGTTTG AT

    Gene models with high sequence identity

    1. AT2G27710.4 [+] show detail - 60S acidic ribosomal protein family
      E-value: 3e-15; Score: 79.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P2 3.1e-66
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 3.1e-66
    HMMPfam Ribosomal protein 60S 3.2e-27

    See the detailed result >

    AT2G27710.4

    Model type
    Protein coding
    Short Description
    60S acidic ribosomal protein family
    Computational Description
    60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1).
    Link
    InterPro Scan - TAIR