K10623

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10623

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10623

Determination of introduced cDNA(s)

  • J013160E04 - Rice Full-length cDNAs - Original: J013160E04

    full reading [+] show sequence

    Nucleotide sequence: J013160E04 - full reading 
    GAGCGTTCGT CTCCCCCTCG GAGAAACGCG CACCGAGCTC AGCTGTCATC 
    CATCCATCCA TCCACGCGAC GCGCAGACAC AAAGAGAAAT ACATACGACG 
    CCTCGTCTTC GCCGGCGAGG TCGAGGCCGT CGACCACCGC TGGAACCAGC 
    ACGGCCTCGG CGGCGACAAC GTGCGCGGCA GCTGCCGCCC GCTCCACGAC 
    GGGCCGGTCA GCCTCATGCA CTGGTCAGGC AAGGGGAAGC CATGGGACCG 
    CCTCGACGCC GGCAACCCGT GCCCGCTCGA CCACACCTGG AAGTCCTACG 
    ACCTCTACGT TGCCGGGGAC GACGGCGCCG CCGCCTCCTC GCCGGCGTCC 
    GGGCCGGCGT TGTCGTCGAC GTCGACGACG TGGCCCGCAT TGGTGTTCTC 
    TTGGTAGAAA TTGAGGATCT CTAGCTGTAG TGCCATACTG GGACACAATA 
    ATTCTTTTGT TGGTTGCGCG GGTTCATGGC AATTGCAATG GTGATCCTCC 
    ATGGCATTGC ATTGCATTGC TGCTGCTGTT GCCGCCGTGA GCTAAGCCAC 
    CCCTCGCCAT CGGCTGTACA GGGCGGTGAA GGGAGGCCGC GGCGATTGCC 
    GCGCGAGGAT GGGGGGAGAA TGGATAGAGA GAAAAGATGA TCTTGTTCTT 
    TTCGGCGGAA TTCAGATTGG TTATTTGGGG GGGATTTTGA TTCTTTTGGG 
    TGGTGATTCT TGGGGTTCCC AATTCGCTCG ATTGGCGGTG TACAATTCTT 
    TGGTAGGAAA GACCTGGAAT TTTTGTTCAA TTATTGATTA TTCTTTCATT 
    CC

    Gene models with high sequence identity

    1. AT1G70090.2 [+] show detail - glucosyl transferase family 8
      E-value: 3e-32; Score: 135.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Nucleotide-diphospho-sugar transferases 1.8e-11
    HMMPfam Glycosyl transferase, family 8 5.5e-10
    Gene3D no description 1.2e-05

    See the detailed result >

    AT1G70090.2

    Model type
    Protein coding
    Short Description
    glucosyl transferase family 8
    Curator Summary
    Encodes a protein with putative galacturonosyltransferase activity.
    Computational Description
    glucosyl transferase family 8 (LGT8); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT1G24170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR