K10828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K10828

Determination of introduced cDNA(s)

  • J023002D18 - Rice Full-length cDNAs - Original: J023002D18

    full reading [+] show sequence

    Nucleotide sequence: J023002D18 - full reading 
    GAGTGGTAGT AGTAAAGCGA AAGCGAACAA AAAGGGGAAA AAAAAAAGAA 
    AAACAAGAGC GCTGTGTCGG AGACCACCGC CGGACCACCA CCGCGACCCC 
    TCGATCCCGG CGATCCCACA GCATTGGTCG GTCCCCGTCG ATCCGGCCGC 
    CGTGGGGTTT GGTCTGGTAC TCTCTGGTGG TGGTGGTGGT GGTCGCCGTC 
    GTGAACGATT CCTTTTTCTG CTTGGATTTT TTTTGTTGCT TTTGGTTGTT 
    GTGATCCCTG TGGGGCTCGG GTTCCGGCCG GTGTAGGGGA GGGGAGATGG 
    ATTTGGAGTC GGTCAACCCG GAGCTCGCCG AGATCGACGG CCAGATCGGC 
    GACATCCTCC GCGCATTGCA AAATGGGTTC CAGAAGCTGG ATAAGATCAA 
    GGATGCCAAT CGACGGAGCA GGCAACTCGA AGAGCTCACT GATAAGATGC 
    GGGATTGCAA GAGGCTTATC AAGGACTTTG AGCGAGTTGT CAAAGATATG 
    GCAGGAAGTA CCGATCCTGA GACTGCTAGG ATGCTTCATG ATAGGAAACA 
    GTCAATGATC AAAGAATTGA ACTCCTATGT TGCTTTGAAG AAACAATATG 
    CAAGTGAAAA TAAGCGAGTT GATCTTTTTG ATGGCCCAAG TGTTGAAGAT 
    GGCTTTGGTG AAGAAAATGT CCTGTTAGCA TCAAATATGA CAAACCAACA 
    GTTAATGGAT CAAGGAAACC AACTAATGGA TGAGACTGAT CAAGCTATTG 
    CAAGATCTAA ACAGACCGTC CAAGAGACCA TCAATGTAGG TACAGAAACT 
    GCAGCTGCTC TCAAATCACA GACAGAGCAA ATGAGCAGAA TTGTTAATGA 
    GCTGGATTCC ATTCATTTCT CCATTAAAAA GGCATCACAA ATGGTGAAAG 
    AAATTGGTTG CAACTGATCG CTGCATCATG GCCTTGCTTT TTCTCATTGT 
    TGCTGGAGTC ATAGCAATAA TAGTCGTTAA GATTGTAAAC CCACAGAACA 
    AGACTATCCG AGACATTCCT GGTCTCGCTC CACCAGTTAG CAGAAGGCTA 
    TTGAGTATTG TAGAAGACAT CTGAACTTCA TACATGTGAA CAAATCAACC 
    AAGAGCAGCT TGTGCTGTTT AACTCGAAGG TCGCAACTAC TACTTGAACA 
    TGATGCACAG TGTTGTAATA CTATACCCAT GGGATCCGTG TGCGAGGTAC 
    TGTAAAATTG TACGAGTATG TTATGACTCT GACAAGCAGG TTTGCTTGTA 
    AGAACTGTAT TCTGTGAACA TTCACATATG TACACGAGCA TATCAATCTT 
    TTTTAAGAGT GACAGCAGCG TATGGATCAT CCAATAATAC AGCGTTTTTT 
    GCAAATAG

    Gene models with high sequence identity

    1. AT2G35190.1 [+] show detail - novel plant snare 11
      E-value: 7e-79; Score: 291.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR21230:SF2 9.10000425645573e-14
    HMMPanther PTHR21230 9.10000425645573e-14
    HMMPanther NOVEL PLANT SNARE 3.7e-88
    HMMPanther VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATE 3.7e-88
    Gene3D no description 0.00021
    HMMSmart Target SNARE coiled-coil domain 4.5e-10
    ProfileScan Target SNARE coiled-coil domain 12.829
    Coil coiled-coil 0

    See the detailed result >

    AT2G35190.1

    Model type
    Protein coding
    Short Description
    novel plant snare 11
    Curator Summary
    plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.
    Computational Description
    novel plant snare 11 (NPSN11); FUNCTIONS IN: protein transporter activity, SNAP receptor activity; INVOLVED IN: cytokinesis; LOCATED IN: plasma membrane, cell plate; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Sec20 (InterPro:IPR005606); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 871 Blast hits to 814 proteins in 236 species: Archae - 12; Bacteria - 157; Metazoa - 137; Fungi - 78; Plants - 153; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023001B21 - Rice Full-length cDNAs - Original: J023001B21

    full reading [+] show sequence

    Nucleotide sequence: J023001B21 - full reading 
    GGCTGTTTCT CTTTCAACTG CTTCACACTG TTGCTCTCTT CCCTCTCTGC 
    ACCTGCAACC ACCACCACAA CCATATACCA GTACCATCGA GGAGGTTGCC 
    TTCTCTTCCG GTCGGAAGCT TGCTTTCCTT TTCTTCTTCT TCTTTTCAGA 
    TCCAAGGTTA ATTTCAGCCG ACACACACAG GAATTGAACC TGTGCTCTTC 
    CCAGGTTTCT GTCTGTCTGC AAAGTTGGCC GCTTTCTGCA GATTCATTTC 
    CTTTGCCACG TTTTCTGCTG CAAAAGTTGG ATCTTTGCAA GGGGGACTGG 
    CTGATTTCAT TTGAGGTTTC TGAATAAGTT GGGGAGCTTG ATTTGGAGAG 
    GGTTACTTTT TTGGGGGTGA TGTTTCGATT TGCAAATCAG AACAAGATTA 
    CTTAAGTGCT GCTAAGCTCA ATTGGAAGTG GAAGATCTTG GTCACGCGGC 
    ATCAGGTGAA AGTTTGGTCG CTGTGCATTT TTCACAAGGG ATGTCTTTCC 
    GCAGCATAGT CCGTGATGTT AGGGACAGCT TCGGGAGCTT ATCAAGACGG 
    AGTTTCGAGG TGAGAATTTC AGGCCTCCCT GGTCTTTCTG GCCATCACAG 
    AGGGAAGTCC CTTGGATCTT TGAGCGAGCT GCGTGACAGA CCTGTAGTAG 
    TAGATCAAAG CAGATGGGTT GGTCTTCCTC CTGAATTACT CCGTGATGTG 
    ATGAAAAGAC TGGAGGAAGG AGAGAGCAAT TGGCCGTCCC GCAAAGATGT 
    TGTTGCCTGT GCAGCAGTCT GCCGAACATG GAGAGAGATA TGTAAGGATA 
    TAGTGCAAAG CCCGGAAATC TGTGGAAAGC TCACTTTTCC TGTGTCTCTA 
    AAACAGCCTG GGCCTCGAGA TGGTTTAATC CAGTGTTTTA TCAAAAGGGA 
    CAAATCAAAA TTAACTTATT ATCTCTACCT GTGTCTTAGC CCTGCTGTGC 
    TCAGCGAGAA TGGAAAATTC CTTCTTGCAG CTAAGAGGAA TCGTCGGGCA 
    ACTTCTACGG AATACATAAT TTCTGTGGAT TCTAAAAACA TCTCACGGTC 
    AAGTAATGGT TATGTTGGAA AAATGAGGTC AAATTTTCTT GGCACCAAAT 
    TCGTTGTCTA CGATACACAG CCCCCGTACA ATGCTGGGAG CCTCATGTCA 
    TGTCAGCATG GCAGCCGGCG AATCTCTTCT AGGAGGGTTT CCCCAAAGTT 
    ACCCACCGGT AGCTACCCAA TTGCTCATGT GAAATATGAG TTGAACGTTC 
    TTGGCACTAG GGGGCCGAGG CGTATGCAAT GCACCATGCA TTCGATCCCA 
    GCCTCAGCAG TTGATCCTGA AGGTGTGGTG CCTGGTCAGC CAGAGCAGCT 
    TCTCCCAGGT CCATTCGAGG AGTCGTTTCG CAGCACAAAC ACCTCCTCCA 
    GGTTCTCTTT CATGGACAGA TCTCTGGACT TCAGCAGCTC CCGCTTCTCG 
    GAAATCAGTG GATCAGCGAA CCAACAGGGC GAGGATGATA TACCTGAGGC 
    TAAGGAGAGG CCTTTGGTTC TACGAAACAA AGTGCCAAGA TGGCATGAGC 
    AGCTGCAATG TTGGTGCCTC AACTTCCGTG GCCGGGTAAC TGTGGCTTCT 
    GTCAAGAATT TCCAGCTGAT AGCTGCTGCG TCCTCTGAAT CTTCACAGTT 
    GGAGCAGCAG CAGCAGCAGC AGCAGCAAAA CCATGCTTCG AGTTCTTCTT 
    CGGCATCCGA TCATGGCAAG ATGATCCTGC AGTTTGGTAA GGTTGGCAAG 
    GACATGTTCA CCATGGACTA CCGGTACCCT CTCTCAGCAT TCCAGGCTTT 
    CGCCATCTGT TTGACCAGCT TCGACACCAA GCTGGCTTGT GAATAACATA 
    CATCAGTACT ATAAGTGTGT TTGTATAGCG TGTCAGTGTG TGTGGATAGT 
    ATAAACATCA GTCAGTCTCG TTGTGTGCAG ATGCAGGTGC AGTTTGTTGT 
    TGCTGTTGAT TTAGTTGTCT GTTCTTCTTG TGTGGCAGAT GTGAACAAAG 
    AATGGCAACA CATCTCAAGT GCAGTTGTTT GCTGCTACTA CATTTATATC 
    ATGTAAGTAT TTGGAGGTTG GAAGTGGAAC AACCCCAGGC TCCTCTAGTT 
    TCTCGAGAGG GTATGCATCT TACTTGCGAA TGTGATTTAT CTACTCGGTC 
    TATATATCTT GGTATCCTTT AGGATCATAG CTGCTATATG AGAGAAGCTA 
    CACTGCTACA GCCTGCATAT GTGCTTGAAG GAGCCACTTG GAAAGGAGGC 
    AATATCAGTT GATCGATTCA TAGGCATGCA GATTATGTAC AATTAACACT 
    TAACAGTAAT GAAGCACCAT TCCTGCAATC TTGGAAACAA ATCCTAGATG 
    AAAAAAAAAA GAAACCTTCA TAAACTGCTT AACGGGAGAT CGTTACAGGA 
    AGAACCCTAT GATATGACTG ACTAATCAAC AGCCCACTCA AAATCCCAGG 
    AAGAGATGGC AACACTCAAC ATACGTCAAA TGACATCCGG ATTCCATTTG 
    TACACCTGAT GAATAACAAG TTGTTGGTTG TCAGCAATCC ATGAAAACAA 
    CTTCACTTTT CACAGCCACA TTCATGTATT TGTCAACAAA GTACATCAGG 
    ATGTTGTTTC TTCTCAGGAG ATGAAGGGAG TGCAGCATTG CCAGTTGGCA 
    AGATCTCCAG ATCTCTAACC TCACTAGAAC TCTCAATCTT AGTTCTTGTA 
    ATTGGGATCT CATTGTCTAA ACCAGGTGAG CAGTCAGCTC TGCGATATTT 
    CACGCCATTG CTTTCAACTC CCAACTCTTC GTCACCCAGT TCATCTGACC 
    GACGTTGTGA GGTCTTAAGG ATGTCGAGGC CCATCTCAAG ATCATCCTCG 
    ACTTTGGCTC GTGGACGGTG GGGTGTCTCC TCTTCTGCTA CATTGGAACG 
    GCTGATTCGT GGTGGTGCTA CCCCATGGTC CTCTTGAACA ATTGCTCTCA 
    GGTTGATCCT TGAAGGCGCT CTTTTGGTGC AGAAGAATTC AGAACAGTTG 
    TTCATGCAAC CACGGTCAAA CACGTTGGAT TGGTTGTTGT ATTTGTACTT 
    GAGGTTCTCA TATGTTGCCT TCAAAAAAGG AAGTGGAAAT TCAATTCAGA 
    TCACAGTTTT CAATTTTTC

    Gene models with high sequence identity

    1. AT1G25280.1 [+] show detail - tubby like protein 10
      E-value: 2e-148; Score: 523.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Tubby, C-terminal, conserved site 0
    PatternScan Tubby, C-terminal, conserved site 0
    HMMPfam Tubby, C-terminal 7.1e-112
    HMMPfam F-box domain, cyclin-like 5.4e-08
    FPrintScan Tubby, C-terminal 5e-76
    FPrintScan Tubby, C-terminal 5e-76
    FPrintScan Tubby, C-terminal 5e-76
    FPrintScan Tubby, C-terminal 5e-76
    FPrintScan Tubby, C-terminal 5e-76
    FPrintScan Tubby, C-terminal 5e-76
    FPrintScan Tubby, C-terminal 5e-76
    Coil coiled-coil 0
    Gene3D Tubby, C-terminal 9.4e-101
    superfamily Tubby, C-terminal 1.5e-106
    superfamily F-box domain, Skp2-like 1e-06
    HMMPanther TUBBY-LIKE PROTEIN 2 2.7e-179
    HMMPanther TUBBY-RELATED 2.7e-179

    See the detailed result >

    AT1G25280.1

    Model type
    Protein coding
    Short Description
    tubby like protein 10
    Curator Summary
    Member of TLP family
    Computational Description
    tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 961 Blast hits to 946 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 21; Plants - 475; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR