K10931

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10931

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10931

Determination of introduced cDNA(s)

  • J033020D08 - Rice Full-length cDNAs - Original: J033020D08

    full reading [+] show sequence

    Nucleotide sequence: J033020D08 - full reading 
    TACTCGACAC TACTCGAGCT CGCGAGCGGC GAGCCCAAAA CCTGACAAAC 
    CACACGCCCA CCTCGCCATG GCGCGGCACC TCGCGCCACC AGGAAGCTTC 
    CACCGCCTCC TCGCCTCCCG GCACTACCCG CCTTCCTCCC CGGCACCGCC 
    GCCGCGCCCT CTCCTTCTCC TCCCCAAAAC CCTAATACCG CCGGCCGCCG 
    CCGCAATGGA ATTCCCTCGC CGCGGGCGGC GCGACGTCGC CGCCGCCTCC 
    GCCCCGGCAT CCTCCTCGCC GGAGACCGAG GTAGCGCCGG GGGCCTGGGG 
    GAAGGTCTCC GCCGTGCTCT TCGACATGGA CGGCGTGCTC TGCAACAGCG 
    AGGAGCTCTC GCGCCTCGCG GGCGTCGACT TATTTGCCGA GATGGGCGTC 
    GACGTCACCG GGGACGACTT TGTTCCTTAC ATGGGCACAG GTGAGGCTAA 
    TTTCCTTGGA GGTGTAGCGA AGTTGAAGGG AGTGAAAGAT TTCAACGCTG 
    AAAGTGCCAA GAAACGTTTT TTTGAGATAT ATCTTGACAA GTATGCAAAG 
    CCAAATGCTG GCATTGGATT CCCTGGGGCT CTAGATCTCT TAACAGAGTG 
    CAAAAATGCA GGTTTGAAGG TTGCTGTTGC ATCCAGTGCT GATAGGATTA 
    AGGTGGATGC AAATTTGGCA GCTGCTGGTT TGCCTCTGTC GCTATTCGAT 
    GCCATTGTTT CTGCTGATGC ATTTGAAAAT TTGAAGCCTG CTCCGGACAT 
    TTTTTTGGCA GCATCTAAAA CCCTAGGTGT TGACACAGAT GAGTGCATTG 
    TGATAGAAGA CGCACTTGCT GGAGTTCAAG CTGCAAAAGC TGCCGAAATG 
    AGATGCATTG CTGTGATGAC TACTCTGGAG GAAGATGCGT TACAGCAAGC 
    CAGTCCCTCA CTCATACGGA AGAATATTGG AGATATTTCA ATTAGAGATA 
    TTTTGTATGG TGGTTCTAAT GCTTACCACA GTATGTAGTT CAAGCAAAGT 
    TTATTTCAAT AAAATAATGC ATCTCTTGTA TTTGAAACTG GAAAGAAAAA 
    AAAAATCTGC ATATCTTGTT GTGCAAAACT CATTATATTT GCTTTGTTTC 
    ATTGGTTTGA ATAAGACCCC TATCCCATTT CCTTG

    Gene models with high sequence identity

    1. AT1G56500.1 [+] show detail - haloacid dehalogenase-like hydrolase family protein
      E-value: 6e-97; Score: 351.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 3 3.6e-08
    Gene3D no description 3.3e-32
    FPrintScan Haloacid dehydrogenase/epoxide hydrolase 6.6e-10
    FPrintScan Haloacid dehydrogenase/epoxide hydrolase 6.6e-10
    FPrintScan Haloacid dehydrogenase/epoxide hydrolase 6.6e-10
    FPrintScan Haloacid dehydrogenase/epoxide hydrolase 6.6e-10
    superfamily HAD-like 1.9e-45
    HMMPanther 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 2.4e-35
    HMMPfam Haloacid dehalogenase-like hydrolase 1.5e-16

    See the detailed result >

    AT1G56500.1

    Model type
    Protein coding
    Short Description
    haloacid dehalogenase-like hydrolase family protein
    Computational Description
    haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: metabolic process, cell redox homeostasis; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Low-density lipoprotein receptor, class B (YWTD) repeat (InterPro:IPR000033), Thioredoxin fold (InterPro:IPR012335), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Thioredoxin-like (InterPro:IPR017936), NHL repeat (InterPro:IPR001258), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT3G07060.1); Has 23445 Blast hits to 20574 proteins in 2565 species: Archae - 340; Bacteria - 17044; Metazoa - 1036; Fungi - 332; Plants - 721; Viruses - 3; Other Eukaryotes - 3969 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR