K11046

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11046

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11046

Determination of introduced cDNA(s)

  • J033064I03 - Rice Full-length cDNAs - Original: J033064I03

    full reading [+] show sequence

    Nucleotide sequence: J033064I03 - full reading 
    GACTTCTGCA TCACGCCGCT GTTCTTGCCG TGCGCTTTTC TCCCCTTTCC 
    ACCAGCTGAA CTCCCGATCG GTCTCCCCCG ATCAGAGAGA TCCATTCATC 
    CACCCAGCAA GGCAATGGAT GCCTCTGACC AAGGTTGCCG GCTGCTCGGC 
    GCCCAGAGAT CGCTGCACGG CCTCCTCGGC GGCGGCGCCA TGGCGGATGT 
    GGTGCTGTGG AGGAGGAAGG AGGTGGCCGG CTGGTCGCTG GCGGCGGTGG 
    CGGCGTCGTG GGTCCTCTTC TATTGCTTGC CTGGCTACAC GCTGCTCTCC 
    TTCGTGTCCA GCGTGCTCAT GATCGTGCTC GTCGTCCTCT TCGTCTGGGC 
    CAAGGCCGCG CGGCTGCTCA ACAGGCCACC TCCACCTGTT CCACTGATCA 
    AAATATCTGA AGACTCAATG AGCAAAGCAG CAGCTGCAGT GGGTAACATC 
    CTACATAAGG CACTACAGGG TTTTGAAAAC ATTGCACACG GAAAGGACTC 
    CAGTCTCTTT TACAAGATGG TTTCAGTATT ACTGCTGATC TCCATAGTTG 
    GCCGTGTGAC TGATCTCATT ACTTTGGTAT ATGCATGCCT TGTTCTTGCT 
    CTCACCATCC CTGCATTGGT GGATAAATAT GAAGAAAACA TTGCCAAGTT 
    CTTAAATCAA GCGTCAGCAA ATATTCAGGC ATGTGGACAA GCATGGAAAG 
    CATATAAATC TAAGATTAAG AACTGATCTT GGAAAACAAT AAACTGTTTT 
    GATCTCATTG TACAGTTGTC AACAAAATTT TGCCTTGTAT ACTTGTCTTC 
    CTAGAGTTAA ACATGTTGAC ATCCGTCTT

    Gene models with high sequence identity

    1. AT5G41600.1 [+] show detail - VIRB2-interacting protein 3
      E-value: 2e-21; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Reticulon 5e-42
    HMMPanther RETICULON-RELATED (PLANT) 3e-50
    HMMPanther Reticulon 3e-50
    ProfileScan Reticulon 25.07

    See the detailed result >

    AT5G41600.1

    Model type
    Protein coding
    Short Description
    VIRB2-interacting protein 3
    Computational Description
    VIRB2-interacting protein 3 (BTI3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulan like protein B3 (TAIR:AT1G64090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR