K11212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11212

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11212

Determination of introduced cDNA(s)

  • J033133P06 - Rice Full-length cDNAs - Original: J033133P06

    full reading [+] show sequence

    Nucleotide sequence: J033133P06 - full reading 
    GACGCCCTCC TCACTCTCGT CTCTCCCTCT CCCTCTCTCG CCGCCGCCGC 
    CTCGCGCCAT CGCCAACGCC GTCCCCGTCA CCTCGCGCCT GCGCCCTCGT 
    CCCCGCCTCC GCCTCGCGTA GCCGTCGCGG TCGCCACTCC CTGCCACCAC 
    GCCCTTCATC GCCCAATCGC CGTCCCTGAG CACGGGCTTC GAGGCGGACG 
    CGGAGAAATC GAGGAGGCGA ACGCTCCTTC CTCTTCCCCT CTTGTCTCTC 
    CTCTGCCTGC GAGGAGCGCT GCTTTGCCGC CGTCATCGCC GTCGTCACCT 
    TGCCGGTCTA GCCGCTCGCT GCCATCAGAG TGGTCGGATC TGATGGTGGC 
    GAGCACGTGG CTGTCGATTG TTTGGCGGTT GATGGAGCCA CCGTTGTCCT 
    CCCACAAGCC GGTATCACCA TTTTCGCGTT GTAGTGGACA AGGGGCTCCA 
    CGGTGGCGAC GAGCTCAACC TTGGCGGATT GAGCGATGGC GTCAACCTCG 
    CCGGCGGCGC CGATAAATAG AGGCTTGCTG GATCTGATGG CGGCGAGGTC 
    GTGGCCGCCA GATCCGGTAG CCTGGCGGCT AATGGAGGGG CTGTTGGTCT 
    GGCGGATGGA GGTGCTCACT CTCCTCTCCG TCGTGCATTC ACGTTTAACT 
    GGTGCTGCCG CCACCACCAT CGCCGGCACG GCAAGGCATC CACCTCCTCT 
    GCACCATCCC CTTCCTCCTC ACACTTCTCT GCCAGCCTGA AGCACCATCG 
    CCGGCACGGC AAGGCATCCA CCTCCTCTGC ACCATCCCCT TCCTCCTCAC 
    ACTTCTCTGC CAGCCTGAAG CACCCCATGA GTATGGATCC CTCGATTTGG 
    CGCTAGACCA TGACGCTGCC TCAAGCCCTC GCCGATGAGT TCACTGCCAC 
    CGCCACCACT GCGCGGCCAG ACGACATGAT GCTCGTGAAT CGGATGCAAC 
    GGCTTGCTCA CTAGGATAAC TGACATCGGC AGTTCATGCT AGAGCAGGAA 
    CGGATATACA GGTACTGAAA ATACTGATTA TCCTGTGTGA GCTGTTCAAG 
    AATTCAAAGA TGGGTTCATT CACAAGGAGG AGTTCCAGCT AGCACTCTTT 
    AGGAACAGCA ACAAGAAGAA CCTTTTCGCT GATCGGATAT TTGATCTCTT 
    TGATCTTAAG CGCAATGGCA TTACTGATTT CGGGGAGTTT GTTCAATCCA 
    TTGACATTTT TCACCCGGAA ATGCCTTTGG CAGAGAAGAT TGCCTAGGCT 
    GCAGGATTTG TACCTGTTGA GCCCATTTAA ATACTCTAGA GGAAATACTG 
    GAGAAGAAGG TGGAGGAGGC CACCGAAAGG AAGTTTGATA GTTGTGCAAG 
    AGCTCTTTTT TGGCTTAGTA GGTAAACTCA CACATAGCAT ATAATGGGCT 
    TTAGTTCTTC TCTTATGGAG TTTTGCTACC TACAAATTTC AACCTTGCAT 
    ACCTCTTCAT ATTAATAGTT ATCTTCTCTA ACATCACTAG ATGCATGGAT 
    TCACTATTGC ACCGCAAAGC TTTGCACACC TTGTAGAAAC TGCATGCATG 
    ATCATTCTGA AGTCATTGCA GCATTGGATC TCTTTAGCAA CCTATGATTG 
    GTCAGGGTCC ATTGAATCTA AGTGTACCAT TTTTTTTTGT CGAAAATGAC 
    TGTTTTTCCA TCGCACTTGT CCTGCACAAC TATGATTGTA TTGATACTGA 
    ATTCACCTTA CAAAGATCAA AATATTTGCT TTTAGTGAAG TTGCATATTA 
    TCTGCTCATT TTTCAGGCCA AGTTTAGATT AGACAGGCTG AAATCAACTT 
    GATGGCAAGT CTAAAATGGT TGTTCCAATG TGTTATTATG TGATACTGCC 
    TTGGTGAGCT GGTTTGTCTA TGCATAAAGA TTTTCCTTTT TGTGTCACAG 
    TAGTATTACC ACGTGTCTAT GGATCACTCT GTAAATGTCA GAATAAAACC 
    CCACGTATAC TAGCTTGGAT ATAGGCGTGG TTTCAATGCA GTTCCAAGAA 
    TCCACATAAG TTTTATCATC CATTTCCAAA TTATTCATCC ACATTTGCAT 
    TTCAAATTAA TTTACAGTAA CACAAATCAA GATCTGTGCT TAAAAAGTTA 
    TAATTGTCTT TAGTACCTCA TAGCTGTTAT ATTACTCTCA TTTCTCCTCC 
    ATTGCATTAC GGAGAAATAT CTTCATTGTC ATGATTTTGG ACATGTCTTT 
    ATGTTTAAAA TAGCATCTGT TGTATGTGCT TGTTTAATTT ATACTAGCAG 
    TGCTGTTGTA CATGAATGAC CATATGTACA TTAGAAAATA TGAAGTTCTT 
    TGTACTTAGT CCTTACCATT GGGTTCGACA ATATGTTGTC TGTACAGTAC 
    CTGGCTTGTA TTAACGGCAA GGCTATGATA TCCTTTATGT ATTGAAATTA 
    CCATCCTACA TGTTCATGGC TCCTTTTTAT TTGCTTATTC CTGTTTATAA 
    AAAAAGATGC AATTCTCTCT TTACATTTGT TGACTTTTGA TCAATCAAAT 
    TATATAGGAC GAGTTGTATA CAGGAGGCGC AAAAGGGTGC GACCCAGAGC 
    AACAACATTG TTTATGGAAC AGTTTCTATT TGCATTGTAA TAAACAATCT 
    TACATCTTCA CGACTTGAAA TTCTTTAGTT GATGGCCTCC AATCTAAATA 
    GTTCTTAACA TGTTACCAGT TACTGCTTTC TACAAAGTTA TATTTCTGAA 
    TGGTGTTTTT CCCAGAATTC AGAATCTTAA AATCTGTGCT ACTGGAAGAG 
    TTATTATTTC AGTTTGTTTA ATTAAAATCA ACTTCACTGC ACCACATAGG 
    CACATGCTAT GAATCTACTA GAGTATGACC ATGTAGCATT TGTCCATGGC 
    CTTGAATTTG TTGATGATTT TTTTTGTAAG CATTGAAGTT CTTCTGATGG 
    TCTGATTTGA CTACTGCCTT AATTTGCTGA GAGGAAAAAT TCTGAACGGA 
    GATTCAACAA TTCAATCAGA GGAAAAAAAA TATCAGCAGA CAGTTCTTGA 
    AATTTCATCA TCTGCACCAG TTGTGAGAGA ACTCTTTAGT CCTATTCTTT 
    TGTGCCTTGA AAGTTCGCGT TTCTAAAATA CAAGTACTTC CTTTTGTGCT 
    ATTGATTTGT AATATTTGGT GTCAGTCGTA CAATATCTGA CTAGGTCATT 
    ATCATTTACA CAATAATTTT TATGGTCATT AACTGCAGAA TCGAAAGAAA 
    GCAGAAACCA ACAATTTTGT TCTCCAAGGT TTGATCTATG ATCACAAGGG 
    GACAAGTTAT TATTCTCAAG AGGATTGGGT AAGTGTCTCG AAAGTGATTC 
    TCTTGTAGCC AAGCTTGTTA AACAAAAATC AAGGCCCACC TTGGCACTAA 
    TGGATCTTAC AAGCTTGATA AACAAAAATC AAGGCCCACC TTGGCACTAA 
    TGGATCTCCA TCCCCATCAA GGCCCACCTC GGCACTAATG GATCTCCATC 
    CCCTGTTATG TGTAGTACTG TATTTCTGAT TTCCTAAAGT GGTCTTGGTG 
    AAGGTTGATG ATTGCTTTCA CTAGTCTCGT TGTTTCTCTG TTTACTGAAT 
    CATACTAAGA TATGACTGAC ATTTAATAGT TGAAATAAGC TTAGGCTTTT 
    AGACCTTTCT TCCATTATGT GTATTGTATG CATTATTAAT GTATTAATAT 
    TAAATTCTTT TTATGATAAC ATCCATGTTT AGTGACACTT AAAAAAGAAT 
    CACGGAGAAA TTTAACCCTA CTGGATTTCC TCCTATGTAT CATGACCAAA 
    TAACGAACCA TATCCTGTGC CATAAATATT TCTAATGAAA ATTAATATAG 
    TAAGGATAAA ATTTGTCATA TAATATTAAT AGCCCTCTTT AGAGGACAAT 
    TACATGCCTA CAATTTTCTT TTATGTACAT GTTTATGGAT TTCTTTTGCT 
    GAGGTTGAGG AGAAGAGGAT TGAGAAGATT GGGAAGATAC ATAAAACGAG 
    GCCCCACGGT TCCGACTGCG GAATATTATA CCCATAGATG GTGCTGAAAT 
    TTGGTGGAGC TTTTGGTGAA GAAAAAGCAA TTGGTGGAGG ATAAGAAGCA 
    GGGAGTGATT CCATTGAATG TTTGAAATGT TTGCTTTCAT TTTCTGTTTT 
    CAGATTTCCT GAAGCAAGTT TAACCATACA TCACAAATGC CTAGCCCTTC 
    GATGGAAACA TTTTTTTAAC AGTTTAAAGT GCAGCTATAC CTTTTCATCG

    Gene models with high sequence identity

    1. AT5G24270.2 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 6e-21; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Calcineurin B protein 1.60000240695986e-26
    superfamily SSF47473 2.19999900980707e-10
    Gene3D EF-hand-like domain 7.99999145876753e-09
    HMMPanther PTHR23056 1.60000240695986e-26

    See the detailed result >

    AT5G24270.2

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Curator Summary
    encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
    Computational Description
    SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
    Link
    InterPro Scan - TAIR