K11231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11231

Determination of introduced cDNA(s)

J023131F23 - Rice Full-length cDNAs - Original: J023131F23

full reading [+] show sequence

GATTCCTCTG CCTCTCCTCC TCTCTCTCCG CTCTCTCTCC TGCCAAGCGA 
CGGCCGCCGC CGCTGCTTGC CGTCCCCCTC ATCCTCTTCT TCCCGCAGTT 
GGCGACCTCC CCCGCGCACT CCCTACTGCG AGCCGCTGCT GTCGCCGTGC 
CGTCGTCCTG CCATCGCCAT CCTTTCGCTC CTCGCCGGCA GATCCGGCCG 
CCCTGAAGCG GGGGAAGCCT GGAGCCGCCC TCTACTCTTC TCCCTCTACG 
CCCGGCACAG CCCCTCCCTC TCCCTCTCCA TCTTCATTTC CGGATCGATG 
GATGCCTGTG ATTAGGTGGC CTAGGGCTCA TGGTTGACGG CGTTGGTTGA 
TCCGGCGGCG CAGCACACGA TCTGGTGGTG GTGCGACGCA AAGGGATCGA 
CACAGTTCAG CCAAGCAAGG CAGATATCTG CATCTCAGCA GCTACATGCG 
CATCCAACCT CTGCCATCAG GCTTTGTACG GAAGCCTGAT TTCTTGCATT 
CTTCTTCATT AACCTACCCT CTATTTCTAT TGGTGATGTA GTAGCAGATT 
GTTGGTAAGG TACAGGGACG CCCAGTTGCT CCGAAAGATT GTCTTCGCCC 
GCAGCCCCCT GTTGCTGTCT TGAGCTCCTT GGTCAGTTCA GTGCCTTCTT 
TAATGTTTGT TTCTCCAATA TTTGAAGAGT GGTGATGGAT AGAAATAGGA 
AATGAAAGAA GCCGCTTTTG AGAGCCAATC TGGAAGATTG AAAAAATGGA 
TTGCTTGAAG AACAGAAGAC ATTGTAGGAG TTCTCTTTGT ATGGCTACAA 
CAAGATGGTT GTTGTAGCAC TGAGCATCAG AAGTCATTGT TGCCAAACTC 
ATAATCTGAA TGGCCATGAT CTGCCAATGG AACTCAACAG CTCATCAGTG 
CTAATTACCA GAGGAGATAA TGAAGTGAAG GCTTTGGTTG CTCCTGCATC 
ACTGCTTGCC CATAATGCTG AATTGGAGGG GAAGTGGTGG TTCAGAAGAT 
CGAGGACAGT GAGTGTAAAG TCAGTTACAA TGCGATGAAC ATTAAGTATG 
AGAACTCGAT CAAGGCAAGT GTTATCAACC CAGCTAAGGT GAGAAGATGC 
ATGCTCCAGA ACGCAGCCTG AGTGGTTGCA ATGGTCCTCA CCTTACAGGC 
CATTGTTATT GAGCAGCCGA AGCCCAAGGC TCCTGTTTAT CAGCTAACAG 
AGGGAACCAA CACACTATTT CAGGATAAGC CACATGACAT GCTGCCAAAA 
ACCTGGTCAT GTCAAGGACA AATCCTGACA CCCGGTAGGT GTTTGCTACA 
CATGTCACTC CTATCATTCT TGTTATATTG CAATTGTCAA GAGAAATTAA 
GCTTTGGAAT AAGTGTGGTT ATCTGATTTA CATATGAGTG TGTTGGGTTG 
TGGGGATATT CAACAAATAA TGGAGTCGCG AGTCTGTACT TGTCAAGAAG 
CAGCGATAGA TTCAATGGAG GCATTAGCAC TTGGATGGTC TTACAAGAAT 
TTAGTGCAAT GGATATGTGC CTTTTATTCT CTTATAAAAT TGCCAGTTTG 
TTTGCC

Gene models with high sequence identity

AT2G28000.1 [+] show detail - chaperonin-60alpha
E-value: 2e-19; Score: 26.90

InterPro Scan Digest

See the detailed result >

AT2G28000.1

Model type: Protein coding
Short Description: chaperonin-60alpha
Curator Summary: Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development.
Computational Description: chaperonin-60alpha (CPN60A); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, chloroplast organization, embryo development; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1); Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792; Bacteria - 21835; Metazoa - 1656; Fungi - 1573; Plants - 797; Viruses - 2; Other Eukaryotes - 7241 (source: NCBI BLink).
Link: InterPro Scan - TAIR