K11308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11308

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11308

Determination of introduced cDNA(s)

  • J033026F23 - Rice Full-length cDNAs - Original: J033026F23

    full reading [+] show sequence

    Nucleotide sequence: J033026F23 - full reading 
    GGCTCCTCTC GCCGTTTTGG TCGGGGTTTT AGCGAGCGCG TGGGAGGCCG 
    GAGGCGACGA CGACGACCGC GCCGCCGTCG GAGAAGAAGG CCGCGGAAGC 
    ACCAGTACCA GCACCCGTAT ATGTCTTCTA GCCCCTTCTC CGATCTGGTG 
    GTAGTCGTGC TCCTCGTCTG CGCCGTCGTC GCCGCAGCCG TCCTCCTCCC 
    CCTCGTCTGC GCCCGCCGAT CTATGCACCA GAGGCTCCAC GGCTGGAACA 
    AGTCCACGTC GATGCTCAGG GACGGGTTCG GGGTCAAGTA TTCCGGGTTC 
    CTCCACATAA GGCCGTGTGG TTTCTGTCGA GGAGATTGAC GGATTCGATC 
    GATTCGTGTT CGTCTCCGTC AAATTTTTGC ACAAGAGAAA AAAAAAGTTT 
    CCCCCTTTTA GAGTTTTTCC CCTTCAGTTT TGTCAGTTTT GGTGAGGAAT 
    TTTAGAGTTC TTTTCCGGCA AGAGTTAGAA GAAGAGAGAA ATGGCCCCTT 
    CCAAGCAGCA GCAGATGCTC CTCAAGAAGG TGATGGCGAA GAAGCCCAAG 
    ACGAAGAGGC TATCCGGGTT TGGCCTTAAA CCCTCTGCTG CTTTCTCCAG 
    GCCCCATGTG CCGTCGGCGG CGGCCTCCCT GCAGCCAAGC CGTCGCGTCC 
    GCGTCGTGTT CGAGGACCCT GACGCGACGG ACTCCGACTC TGACGACGAC 
    GAGGACGCCG GCGCCGCCTC AAAGAAGCGC TACTTTGAGC TCTTCATTGG 
    CAAGCCAGCT TCGTCGACGA AGCAGGCCTC TCCGGCGTCC ACCGTCGCTG 
    CCTACGCCAA CATCGGCAAG GTTGGGAGCA CCTGCTACCG TGGTGTGCGC 
    CTCCGGAAGT GGGGCAAGTG GGCGGCGGAG ATCCGCAACC CCTTCACCGG 
    CCATAGGGAG TGGCTTGGCA CCTTTGACAC TGCTGATGCG GCCTCCGCCG 
    CCTACCAGTC TGCCTCCCGC AACTTCGCCG AAGAGAAGCG CCGCCGTGGT 
    GTGGCCTCCT CTGCCTCACC TGCTAGTTCG GCGACCCCTA CTCCGACTGC 
    GTCCTCGTCG TCCTCGACTT CTGCCGCGCC ATTCGCCCAC CCTTCGCCGT 
    CGTCTGTGCT CGAAGCCACC AAGCCAGCTC CAAAGCCAGA GTCGCCGCCG 
    CTGCCGGAGC AAGCTGCAAC TCCCCTCCTG GTGGAGGCTG CCAACGAGAC 
    CGCCGAGCTG CCGGATGACC CAGAGTTCTA CAAGGATATA CTGCGCGGTC 
    TACAGCTGCC GGACATTGAC CCGATGGATT TCCGAGCTGG GCTGGATGCT 
    CTGGATATCT CCGATGTGCC GGCTTACATG AATGGCGAAC AAGACGTACT 
    CTTCACTGAG GACATGCTGC TTGGAGACTT CGCTGAAGAA GATGACCTCG 
    ACCTCGACGA CATCGGTGAT GACTTCTGCG AGGATTTCCC AGAGATACCC 
    AGCGGCTACG ACTTCGGCCG TGGTGATATG TTCCGGCAGG TGGATTTCTG 
    CGTGTGAATT AAGAGCTTGC TAAAGTTATT CATGTTGGTG TGATGGGCCT 
    GTGAGTGTGG GTGCTTGGGA GGAGATTTCT TGGGTTTTTT CCCCGAGCAA 
    AATCAATCTG CTCGTGCCCT TGAGATTTCA GTTCCGCCCA TAAGAACTCC 
    AACGCACATT TAGCATTCGG AGAGTAATTT TGTTAGGTTA AAAGTATGGT 
    AAGTTATAGG TGGTATGTTA TGTTTTTCTT TTTCTTTTCT CAATGTTATC 
    TGGTACCTAA GTTTGTCAAG AAAATCATAG TGGACAAGTC AAGTATTTGG 
    GGCTGTCGTC TCTGTTATGG AAAGAAAAAT AAGTTTTGAT TACATTACAT 
    ATCTTTTGCT CTCGAGATCT GGCC

    Gene models with high sequence identity

    1. AT1G12980.1 [+] show detail - Integrase-type DNA-binding superfamily protein
      E-value: 1e-09; Score: 62.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 17.148
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.1e-14
    superfamily DNA-binding, integrase-type 8.6e-16
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-10
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.4e-14
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.7e-08
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.7e-08

    See the detailed result >

    AT1G12980.1

    Model type
    Protein coding
    Short Description
    Integrase-type DNA-binding superfamily protein
    Curator Summary
    Encodes an AP2/ERF protein, is expressed in a subdomain of meristem stem cells, in lateral organ anlagen, and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants. Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA.
    Computational Description
    ENHANCER OF SHOOT REGENERATION 1 (ESR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DORNROSCHEN-like (TAIR:AT1G24590.1); Has 5974 Blast hits to 5668 proteins in 251 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 5957; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR