K11319

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11319

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11319

Determination of introduced cDNA(s)

  • J013159G18 - Rice Full-length cDNAs - Original: J013159G18

    full reading [+] show sequence

    Nucleotide sequence: J013159G18 - full reading 
    GGCTCGCAGC TCAAGCACCT CTCTCAAGCC GCTTTCCTCT ACAGGACCGG 
    TTGCTTGGTC ACATAAGCTT TTGGGGGAAA CATGAGGCTG TCGGTGGCCA 
    TCCTCTGCGC CCTCGTCGCC GTGCAGGCGG CGGCGCTGCT CCTCGCCGGA 
    TCGGCGGCCG CGGCCAGCGA GCTCAAGGTC GGGTACTACC ACAAGAAGTG 
    CAAGGGCGTC GAGAACGTGA TCAAGTGGCA CGTCATCAAG GCTCTCAAGC 
    AGAACCGCCG CACCGGCGCT GCCCTAGTCC GCCTCCTCTT CCACGACTGC 
    TTCGTCAGGG GTTGCGATGG GTCAGTCCTG CTGGACAAGT CGTACGAGAA 
    CCCACACCCG GAGAAGGAGG CGCCGGTGAA CATCGGGCTG GCGGCGTTCG 
    ACCTCCTGGA GGAGATCAAG GCGGCCGTGG AGAAGCGGTG CCCCGGCGTG 
    GTGTCCTGCT CCGACATCCT CATCTACGCG GCGCGCGACG CCGGCAGCAT 
    CCTCAGCAAC GGCCACGTCC ACTTCGACGT CCCCGCGGGC CGCCTCGACG 
    GCGTCGTCTC CAGGGCCGAC GAGGCCCAGG CGGAGCTCCC GGACTCCACC 
    ATGACCGTGC AGCAGCTCAA GGACAACTTC GCCGCCAAGG GCTTCGACAC 
    CGAGCAGCTG GTCATCCTCT CCGGCGCGCA CTCCATCGGC CAGGGCCACT 
    GCTCCTCCTT CACCGGCCGC CTCTCCGAGC CGCCGCAGCA GATCACCCCG 
    GCGTACCGCG ACCTCCTCAA CTACAAGTGC TCCCAGGCCG CCAACCCGGA 
    CGTCGTCAAC AACGTCCGCG ACGAGGACGC CTCCGTCGTC GCCAGGTTCA 
    TGCCGGGCTT CGTCAGCCGC GTCCGCAAGA TCAGCGACTT CCTCGACAAC 
    ACCTACTACC ACAACAACCT CGCCAAGATC GTCACCTTCC ACTCCGACTG 
    GCAGCTGCTC ACGGACGCCA CGTCGCTCTC CAAGGTCCAC GAGTACGCCG 
    ACAATGCCAC CCTTTGGGAC TCCGACTTCT CCGACTCGCT GCTCAAGCTC 
    AGCCAGCTGC CCATGCCGGA GGGGAGCAAG GGGGAGATCA GGAAGAAGTG 
    CAGCGCCATC AACCACTTGT ACTAAATGCA TTGCATGCAT GGACACAAGA 
    CGACCACACA GAGACGATGA TCAACGACGA CTATGCTTGT AGTAGATTGA 
    TTTGGCTTTC ACACATCCAT TCTTTTGATT TCCATTTGTT GTAATTTGTT 
    CTCTGTAATT TCTCAGCCAT GTTAATCTGT TACATAAGTT AATCATACAA 
    ATCTGGATAT AATAAAAATA TAATTAACTG CGATGTTAAT TAATC

    Gene models with high sequence identity

    1. AT5G14130.1 [+] show detail - Peroxidase superfamily protein
      E-value: 3e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 57.004
    PatternScan Peroxidase, active site 0
    superfamily Haem peroxidase 9.5e-85
    HMMPfam Haem peroxidase, plant/fungal/bacterial 2.6e-65
    FPrintScan Plant peroxidase 2.3e-24
    FPrintScan Plant peroxidase 2.3e-24
    FPrintScan Plant peroxidase 2.3e-24
    FPrintScan Plant peroxidase 2.3e-24
    FPrintScan Plant peroxidase 2.3e-24
    FPrintScan Plant peroxidase 2.3e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-17
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-17
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-17
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-17
    Coil coiled-coil 0
    Gene3D no description 8.6e-50

    See the detailed result >

    AT5G14130.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, fruit, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G37530.1); Has 4547 Blast hits to 4517 proteins in 291 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 177; Plants - 4298; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR