K11346

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11346

Determination of introduced cDNA(s)

J033150C08 - Rice Full-length cDNAs - Original: J033150C08

full reading [+] show sequence

GAGCATCGCC TCCGCCACTC CGGCGAGCCA TCTCCGCCGC CGGCGGCGAC 
GGCCGCCTCT CCCTCCCTCC TCCTTCCCCT ATACTCTTCT CCTCCTACCT 
CCACCAACGG AAGTACGACT GTACCCAAAA CCCTTCCCGT CCCCTCACCT 
GCGCCGCCGT GACAGCCGCG ATGGTCGCCG GCGGAGAAGG CCGGCCGGGG 
ACCCCCAAAG AAAGGAAGGG GGTGTTCCAG TGTGGTTGTC CGGGATGTTT 
CTTTGATTCC GCGAGACTGA ACTTGCCAGC CACGTTTTGG GCTTCGTCTT 
GTAGATGGCG ATTTCTTCCT CAGGCGCTGC GGTTCCATTG GCCGGTCTCT 
TGCAGAGCAC ACCATACCCA CAAACAGAGA GGGGGATGAA AGCTGTTGTA 
TGCGCATCAC ATGGAGCTGT AGGGTCCCTG CTATGGAAGC TAAGTGCCTT 
GCTCTCTGAT GAATATAACC TTCTCACTGG TGTTAAGAGT AATATTATGT 
TCCTTAAAGC TGAGCTTGAG AGCATAGATG TTTTCCTCAA GAAGATGTAT 
GAGTTTGAGG ACCCCGATGA GCAATCTTTG TTCTGGATGA AGGAGTTCAG 
GGAGCTGTCC TATGACATTG AAGACATCAT TGATGCTTCC ATGTTCTCCC 
TTGGTCATGA GTCCAATCGC AGACCCCGTG GCTTCAAGGG GTTTGCTGGC 
AGGTGCATGG ACTTCTTGAC AAATGTCAAG ACACGCCATT GGATTGCCAA 
GAAAATCCAT TGTCTCAAAT GCTGTGTTAT AGAAGCTAGC AATCGGCGTG 
CAAGGTACAA GGTCGATGGT TCTGTCTCCA AACTGAGTAG GACAAGCTTA 
GACCCTCGCT TACCAGCATT CTACACAGAG ACGACAAGGC TTGTTGGAAT 
TGATGGCCCA AGGGATAAAC TCATCAAGAT GCTAGTGGAA GGGGACGACG 
CATTGGTGCA TCAGCTGAAG GTGGTCTCCA TTGTTGGATT TGGAGGCCTT 
GGAAAGACTA CTCTTGCAAA TGAAGTGTGC CGGAAGCTTG AAGGACAATT 
TAAGTATCAA GCTTTTGTGT CAGTGTCCCA AAAACCAGAC ATTAAGAAGA 
TTCTGAGACA TATACTCTCT CAGATCTGCT GGCGAGAGTG TATCAGTGAT 
GAAGCATGGG ATGAGCAGCA GCTCATCCAC ACAATAAGAC AATTCCTTAA 
GGATAAGAGG TATTTTATTG TTATCGATGA TATATGGAGC ACATCAGCAT 
GGAGAACAAT CAAATGTGCT TTTCCCGAAA ATAACTGTTC CAGTAGAATA 
TTGACGACGA CACGTATCAT CGCAGTTGCT AAGTATTGTT GCTCACCTCA 
CCATGACAAT GTATATGAAA TAAAGCCTCT TGGTGCAATT CACTCTAAAA 
GCTTATTTTT CAAACGAACT TTTGGTTCTG AAGATAAATG CCCTCTTCAT 
CTGAAAGAAG TTTCTAATGC AATCTTGAGA AAATGTGGTG GCTTGCCACT 
GGGAATTATC ACAGTAGCTA GCTTATTGGC TAATAAAGCT AGTACAAAAG 
AAGAATGGGA GAGCATACAT AATTCTATTG GTTCAGCTCT TGAAAAAGAT 
ACAGATATGG AAGAAATGAA AAGGATATTG CTCCTTAGTT ATGATGATCT 
TCCTTACCAT TTGAAGACAT GTTTGCTATA TCTAAGTATT ATTCCAGAAG 
ATTACGAGAT CAAGAGAGAT CGGTTAATAA GGAGATGGAT TGCTGAAGGT 
TTCATCCCTA CAGAAGGGGT GCATGATATG GAGGAAGTAG GCGAATGCTA 
TTTCAACGAT CTTATCAACA GGAGTATGAT TCTACCAGTT AATATCCAAT 
ATGATGGTCG AGCTGATGCT TGTCGTGTGC ATGATATGAT TCTTGATCTC 
ATCATATCCA TATCTGTCAA AGAAAATTTT GTAACCTTGC ACGGTGACCA 
AAACTACAAA ATAGTGCAAC AAAATAAGGT TCGTCGCCTA TCCCTCAACT 
ATCATGCTCG AGAAGATATA ATGATACCAT CAAGTATGAT TGTTTCTCAT 
GTCCGATCCC TCACTATCTT TGGATATGCT GAACATATGC CCTGCTCTGT 
CAAAATTGCA ATTTATGCGA GTGTTAGATG TAGAAAATAA AATGGTGTTG 
GATCACAGTT TTCTCAAGCA TATACACAGG CTTTCTCAAT TGAAGTACCT 
GCGACTCAAT GTAAGAAGAA TCACTGCACT TCCTGAACAA CTAGGAGAAT 
TGCAGAATTT GCAGACCTTA GACTTAAGAT GGACACAAAT AAAGAAATTG 
CCATCTAGTA TCGTTCGACT GCAGAAATTA GTATGCCTAA GGGTAAACAG 
TTTAGAATTG CCTGAAGGGA TTGGAAATCT GCAAGCTCTA CAGGAATTAT 
CAGAGATTGA AATCAACCAC AATACATCAG TGTATTCTCT GCAGGAGCTG 
GGAAATCTGA AGAAACTAAG AATTCTTGGG CTGAATTGGA GCATCAGTGA 
TTCAAATTGT GACATCAAAA TTTACGCAGA TAACTTAGTC ACGTCCCTCT 
GTAAACTAGG CATGTTCAAT CTTCGATCTA TACAAATTCA AGGTTATCAT 
ATTATTTCCC TTGATTTCTT ACTGGATTCT TGGTTTCCTC CTCCTCATCT 
CCTCCAGAAA TTTGAGATGT CCATAAGCTA CTTTTTCCCC AGAATCCCAA 
AGTGGATAGA GTCACTTGAG TACCTCAGTT ACCTAGACAT CTACATCAAC 
CCAGTGGATG AGGAAACATT CCAAATTCTT GCGGGCTTGC CGTCTTTAAT 
ATTTCTTTGG ATATCCTCTA GAGCAGCAAC CCCTAAAAAA GGGTTAATTA 
TCAGCTATAA TGGGTTCCAG TGTCTGAGGG AGCTCTACTT CACCTGTTGG 
GAAAGCAAGA CAGGTATGAT GTTTGAAGCA GGAGCCATGC CAAAACTTGA 
AAAGCTTCGG GTTCCATATA ATGCATGTGA TATATGCTCT TTGAATGGTG 
GTATGGATTT TGGCATCCAA CACCTCTGTT CCCTGAAACA TCTCCATGTT 
GAGATTATTT GCCGTGGTGC AAAGCTTCAG GAGGTGGAGG CCTTGGAGAA 
TGCTATCAAA AGCGCAGCTG GCCTCCTTTC TGATGAGCTC ACTTTTGAAG 
TAAGTAGATG GGATGAAGAA GAGATTATTG ATATGGACCA AGAACTGGCA 
GAAGATGATT TTGATACAAT TAATTGAAAG CATAGCACAA TACTGAGGTA 
TATTATTTGT TCTGTTAAGC CACAATTTGA CATATTTTTA TTATTAAATT 
TTATGGGTAA TGCGTTTTGG TCGTCTTTT

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 1e-71; Score: 66.60

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	2.5e-15
superfamily	L domain-like	3.9e-29
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	5.1e-10
FPrintScan	Disease resistance protein	1.2e-13
FPrintScan	Disease resistance protein	1.2e-13
FPrintScan	Disease resistance protein	1.2e-13
HMMPfam	NB-ARC	3.7e-63
Gene3D	no description	4.9e-12

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR