K11416

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11416

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11416

Determination of introduced cDNA(s)

  • J013130C12 - Rice Full-length cDNAs - Original: J013130C12

    full reading [+] show sequence

    Nucleotide sequence: J013130C12 - full reading 
    GCAGCCCTTC TTCTTTCTTT TTTCCCCCTC GCCATAGGCG CCCTGTGCTT 
    TGCTCGCTCG CTGCTTTTCT CTTTCTTAAA AGGCTGCTCC CTCACTCACA 
    ACTCCCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCCTCACCTC 
    TTCTTGTTCT TCTTCTCTCT CTCTTGTCAC TCATCATCAT CACTCTTCAG 
    CTTGCTTGGT TGGTTGGTGG AGCTTGGGAG TTGAGGTCAA ATAGCCATCG 
    ATACACACTC CTCTTTCTTT TCTCTCTTCA TTTCTTTCTT TACATCGTCT 
    CTTTCTTGAT TTCCCAATCT ACTAAGCTCC TACTAGCTCT GTGCTCTGCT 
    GCTTCCTCCC ATCCATGGCG GCGGTTGCCA GCGACCCACC TACCTACAAG 
    TAGCTTAAGC TCAAGCTCAG CTCAGATCGG AGAGGGGTGG TAGAGGTAGT 
    AGCAGTAGTT GAGAGAGAGA GTGAGGATGG AGAGCAGATG GAGGAAGGCC 
    AAGATGTCGC TGGGGCTCAA CCTCTGCGTC TACGTGCCCA GGACGCTGGA 
    CGACGGCGAC TCGCCGTCCA CCGGGTCGTC CACGGCGGCG CTGGTGTCGC 
    CGGTGGCGTC CTCGTCGTCG GCGGCGACCA GCGCCAACAC CACGCCCACG 
    GCGGAGCAGA GGGTCAAGGG CGCCGGCGCG CTCATGCCGA CCACCCCGAC 
    GCCGACCTCC GCCGGACTTC GCCTCTCCAA ATCCGGCAGC AAATCCTTCA 
    AGAAAACATG TGCGATATGT TTGACCACAA TGAAGCCTGG TCAGGGCCAT 
    GCTCTATTCA CAGCAGAGTG CTCACATACC TTTCACTTCC ATTGTATAGC 
    TGCAAATGTT AAGCATGGAA GCAACAATTG CCCAGTTTGC CGCACCAAGT 
    GGAAGGAACT CCCATTTCGA GGTCCCTTGC CTGGTGAATT TCCTCAAGGA 
    AGTGCAAGGA TTAATCCAGT TAATGGGCAC CAAAATGGCG GGCAGATGAC 
    CATACTGCGA CCACTTCCCC GTGCTCGTTC TTCTGGTCGG CTGCATCATA 
    TGACATCGTT GTTGCCTGAC ACTGACCGTA GTATTTTTAA CGATGATGAA 
    CCCTTGGACT CACTGTCTGA AGCAAATGAA GGCTCGCAGC AGGGGTGTTT 
    AAGAACAGTG GAAATAAAGA CATATCCTGA GTTCACTGAA GTTCCAGAAA 
    GTACTTCAGA AAGAAATTTT ACAGTCCTAG TTCATCTAAA GGCACCCCTT 
    GCTCAGACTT TGCAAACAAG CAGCAAACTT GAAGATGGCA ATAGCTTGGG 
    CACAACTCGA GCCCCTGTTG ATCTCATCAC AGTGCTTGAT GTCAGTGGGA 
    GCATGGCTGG TACCAAACTT GCATTGCTGA AAAGAGCCAT GGGATTTGTC 
    ATTCAGAACC TTGGCTCCTC AGATCGGCTT TCTGTAATTG CCTTCTCATC 
    ATCTGCACGT AGACTCTTCC CCCTCCGTCG GATGACTGAG ACTGGTCGTC 
    AGCAAAGCTT GCAAGCTGTT TATTCACTGA CATCAAATGG TGGGACCAAT 
    ATTGCTGAGG GCCTGAGGAA AGGCTCCAAA GTGATTGAAG ATCGACAGGC 
    CAAGAATCCA GTGTGCAGCA TCATCCTACT ATCAGATGGG CAAGATACAT 
    ATACAGTCTC ACCAACCGCT GGTGTACACA AAGCAGCACC AGAGTACTGC 
    TCACTCCTGC CATATACTAG TAATGGTTGT CAACAGGTAC CAGTTCATGT 
    CTTTGGATTT GGTGCTGACC ATGATTCAGT CTCGCTGCAT TCAATCTCAC 
    AAACCTCCGG GGGCACCTTT TCATTCATAG AGACAGAGGC TGCCATCCAA 
    GATGCATTTG CCCAGTGTAT TGGTGGACTC TTGAGTGTTG TTGCACAGGA 
    TTTGCATGTA AAGGTGGAGA GCCTCCACCC TGATGTACAC TTTGGCTCGA 
    TCAGATCAGG AAGCTATTCT AGCAGACTTG CAGATGACAA GAGGAATGGC 
    TCCATAGATG TTGGTGACAT GTATGCCGAA GAGGAGAGGG ATTTCCTTAT 
    GTCAGTAAAT GTTCCCCCAG GTTACGGTGA AACAGCACTT CTCAAAGTTG 
    GCTGTGTCTA CAAAGATCCA CTGATGAAGG AGACTATCAA TATGGCTGAT 
    GTGCAAGTCA AGATCTCTAG ACCAGCATTC GTCTCAGTAC AAAGCGTGTC 
    AATCGAGGTG GACCGACAAA AGAACCGTCT TCATGCAGCT GAAGTCATGG 
    CTGAAGCAAG GTTGTCTGCC GAGCGTGGTG ACCTGACACA TGCTGTTTCC 
    TTACTCGAAG ACTGCCGGAG GATGATCATG GGGTCAACAT CAGGACAATC 
    CGGTGATCGG TTGTGCCAAG CATTGGATGC TGAGCTGAAG GAGATGCAAG 
    AAAGGATGGC CAATCGCCAA AGGTACGAAG CATCAGGCCG CGCCTATGTC 
    CTCTCCGGCT TGAGCTCACA CTCATGGCAG AGAGCAACTG CGCGAGGTGA 
    CTCCACAGAC AGCGAGAGCC TAATCCAGGC CTACCAGACT TCATCCATGG 
    TCGACATGCT GCTGCGCTCG CAGACAATGA GCCGCTCCTC AACCCCTCCA 
    CAGATGAGGC ATGTGAAGTC GTTTCCAGCG CGCCCGCAGC CTAGGTAACT 
    GCAATTTCTA GTGTTTGGCA ACGCCAATAA GGATGGGTTT TGCTAAAGCC 
    TAGATGTGAA TTTGGTGAAA GTAGTAGTGT CAGTTGAATT CTTGGTTTTG 
    TGGCGGGAGG ACGGGACGGG GGTATAGTTT GTGTGGTATA AGGGGGATTT 
    TAACGGTGTA AATTAATTTG GGTGTGGTGG GGGTAAAAGG GAAAAAGAAT 
    CTGTATTTGG GAGAAGGATG GTATAAGAGT TGGGGAAATG GGGTAAGATA 
    GGGTGGCTAT TATTTTTTTT TTCCTTCTTG TTGGTTACCT GGTATACTCC 
    CAGTATTGTA CTAGTAGCTC TCCTCTCTCA TTTGTGTGGT GATGTACATA 
    AAGAGAAGGG TATACATTTG TGAACTGGAA TGTGGTTGAG GATGGGGATG 
    GATACCTAAT CCTTTTGC

    Gene models with high sequence identity

    1. AT5G60710.1 [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
      E-value: 0; Score: 706.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily vWA-like 3.5e-32
    superfamily RING/U-box 5.3e-14
    HMMPanther CA-ACTIVATED CL CHANNEL PROTEIN 2 7.2e-08
    Gene3D no description 5.2e-07
    Gene3D no description 8.4e-09
    ProfileScan Zinc finger, RING-type 12.017
    ProfileScan von Willebrand factor, type A 17.156
    HMMSmart Zinc finger, RING-type 1.6e-06
    HMMSmart von Willebrand factor, type A 4.1e-23
    HMMPfam von Willebrand factor, type A 7.6e-25
    HMMPfam Zinc finger, C3HC4 RING-type 2.2e-07

    See the detailed result >

    AT5G60710.1

    Model type
    Protein coding
    Short Description
    Zinc finger (C3HC4-type RING finger) family protein
    Computational Description
    Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR