K12715

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12715

Determination of introduced cDNA(s)

J023093B20 - Rice Full-length cDNAs - Original: J023093B20

full reading [+] show sequence

GACCCTCCCC GAAGCCGCAG TCCACCGCAA GTCGCCTGCC TCCTCCGCCC 
CGCGCCCCCT CCCCCCGTGC GCCGGCGATC GCCGGTGCCC GCCAGGTTAT 
TTCTTGTGGC ATGGCAAGGA TACATATTGG TCTTGGCTTG TTCTTTCATG 
AATGATGTCC TTCCGTTCGA AGGACAGAAA TGTGCAACCA CGATTTAATT 
GGCCATGGAG AAGCGAATCA CCATTATCAG CACAACTGCT CATTGATATT 
CCACCTGAAA TAGAGTTATC GGACTACAGA AGGTTGCCAG GTTCAGGAAG 
CGAGAGCCCA TCTGGACTTC TCCATGGTGA AGGCTTCAAG GACGAACCAA 
TTGCTGACTT GGATATTTTC TTTGAAAGGC TTTATGAATA TTTCTGTGCA 
AAAGGGCTAC GATGCATTGT TACCAAATGG ATAATTGAGA TGCTTAACGT 
ACTTTTTATG GTATGCTGTA TTGGGTTCTT TTTCTTAATT GTTGATTGGA 
ATGCCCTCGG CCATTTGAAA TGTGGTGTAG AGGCACTCGA ATCCGGGGAA 
AAACCATGTG ATCTAATGCA AGTCGTTAAG CATAATCCAT TAGTTCCATT 
CACATTTCCT AAAATGATCA CTATTGGATC AATGGTTATA TTGACAACTT 
ACGGTCTTAT CAACTTCCTC AAGTTTTTCG TGCAACTCAG AAGTACATTG 
AATATTCGTG ACTTCTACTG TAACAGTCTG AAAATTACAG ATCTTGAGAT 
CCAAACCATC TCATGGCCCA AAATAATTGA GAAGGTTGTC CTGCTACAGA 
AATCTCAGAA ACTTTGTGTT GTAAGGGACC TCTCGGAGCA TGATATTATC 
ATGAGAATAA TGAGGAAAGA AAATTACTTG ATTGGGATGG TCAATAAAGG 
CATTATCTCA TTTCCAATTC GTCCTTGGGT ACCTGGAGCT GGACCAACTG 
TCAAATCCCA TTTGCAAAAC AGGAGAAACC ATCTGATACT CCCGAAAGCC 
CTAGAATGGA CATTAAATTG GTGCATCTTC CAAAGTATGT TTGATAGTAA 
ATTCTGTGTT CGGAAAGATT TTCTAACAAG CCCAGCTGTG TTAAAGAAGC 
GACTTGTATT TGTGGGCATT TCAATGCTTA TCCTTTCACA CTGCCTTGTA 
ATATTCCCAT TAGTGTACCT CATTCTGAGA CATGCTGAAG AAATTTATAA 
TCACCCCAGT ACAGCTTCAT CTAGAAGATG GTCAAACTTA TCAAGGTGGA 
TTTTTAGAGA GTATAATGAG GTAGATCATT TCTTCAGACA TAGGATGAAC 
AACAGCGCTG TGCACTCTTT AAATTACCTG AAGCAATTTC CAACTCCACA 
GATTTCTATA ATGGCAAAAT TCATATCTTT TGTTTCTGGT GGTTTGGCTG 
GTGCTCTTAT AATCATTGGA TTTCTGGGTG AATCTGTTCT TGAGGGCCAT 
ATCTTTGGAA GAAATCTATT CTGGTATACT ATTGTTTTTG GAACAATAGC 
TGCCATAAGT CGAAAAGTAG TGGCTGATGA ACTTCAAGTA ATTGACCCAG 
AAGGCGCTAT GTGCAATGTT GTCCAACAAA CGCATTATAT GCCTAAGAGG 
TGGCGTGGTA AAGAGGACAG TGAAGTGGTG CGAAGAGAAT TCGAAACACT 
ATTTCAGTTT ACCATAGTAA TGCTGCTTGA AGAGATGGCC TCCATTTTCA 
TCTCTCCTTA CTTGCTCATC TTTGAGGTAC CAAAGCGTGT TGATGATATT 
CTGCGATTCA TCTCAGACTT CACGATTTAT GTAGATGGGG TGGGAGATGT 
GTGCAGCCTA AGCTTGTTTG ACTTCAGAAG ACATGGAAAT AGAAACTATG 
CTTCACCATT TGATGCACTT AAAACGCTTA GGAGCTCCCA AGGGAAAATG 
GAGAAATCAT TTTTAAGGTA CATTTAATTT CAAGTTTGAA TTACTTCATG 
TGTTTCTTAC TAGCTATTAT ATTGTACTCA TATTGTTATT AAAAAGATAT 
CTTAAGGGCC ATCATTTGTT TATTG

Gene models with high sequence identity

AT2G31260.1 [+] show detail - autophagy 9 (APG9)
E-value: 0; Score: 689.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	AUTOPHAGY PROTEIN 9	1.6e-216
HMMPanther	Autophagy-related protein 9	1.6e-216
HMMPfam	Autophagy-related protein 9	4.9e-124

See the detailed result >

AT2G31260.1

Model type: Protein coding
Short Description: autophagy 9 (APG9)
Curator Summary: Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence.
Computational Description: autophagy 9 (APG9); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 9 (InterPro:IPR007241); Has 489 Blast hits to 477 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 166; Plants - 51; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link: InterPro Scan - TAIR