K12718

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12718

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12718

Determination of introduced cDNA(s)

J033101H12 - Rice Full-length cDNAs - Original: J033101H12

full reading [+] show sequence

GATTACTCTC CTTCCCTCTC CTCTCCTCTC CTCTCTCGCC ATCTCTCTCT 
CCTCCGATCT GCGCAGCCAG CCGGAGCCAC CGCCGCCTCT CTGTCGCCGC 
CTCGCCCGCG GGGGCTCCGG CGAACGGGCC GCCCGCCTCG ACCTCCCCTC 
CTTCCCGTCG CCGAGCTAGC CTCTCCACGC TGCGCGGGGC CGCCTCCGGC 
GAGCAGGCTG GGCCTCGGGC CTCGGGGCCT CATTCCACCG CCCTGCGCCT 
CTCGGTTCGG ATCGGCTTGA AGGTGAAGGT ATGGACTTCG GTGATTCTAG 
ACGCAAGCCT AATGTCGTCG GGAAGTTCAC CGTAGCTGTT GCACTCACGG 
TCATGTGCAT CATTGTGTTG AAACAGTCGC CTGGTTTTAC CAGTACAAGT 
GTGTTCTCTC GCCATGAAAT TGGTGTGACT CATGTGTTGG TGACTGGAGG 
AGCTGGATAC ATTGGGTCAC ATGCTACTCT TCGTCTACTT AGGGACAACT 
ACCGAGTTAC CATTGTGGAT AACCTTTCTA GAGGGAACAT GGGAGCTGTC 
AGAGTCCTTC AACGTTTGTT TCCAGAGCCT GGGAGGCTTC AGTTTATTTA 
TGCTGATTTA GGCGATGCGA AAGCTGTTAA CAAAATATTT TCAGAAAATG 
CATTCGATGC TGTTATGCAC TTTGCTGCCG TTGCTTACGT TGGTGAGAGC 
ACGTTGGAGC CACTGAGGTA CTACCACAAC ATAACATCAA ATACATTGAC 
AGTGCTTGAG GCAATGGCAG CATATAATGT AAAAACTCTG ATATACTCAA 
GTACTTGTGC AACATATGGT GAACCTGACA CAATGCCTAT CACAGAAGCA 
ACCCCTCAGA ATCCTATCAA TCCATATGGG AAGGCAAAAA AGATGGCAGA 
GGACATCATT TTAGATTTCT CTAAGAGATC AGAAATGGCA GTCATGATCT 
TAAGATACTT CAACGTCATT GGATCAGACC CAGGGGGGCG GTTAGGGGAA 
GCTCCACGAC CAGAGCTGCG TGAGCATGGA CGGATTTCTG GTGCTTGCTT 
TGATGCAGCA CTGGGAATCA TTCCAGGTTT GAAGGTTCGG GGAACTGATT 
ACCCTACAGC TGATGGAACT TGCATAAGGG ACTATATTGA TGTCACGGAT 
CTCGTTGATG CTCATGTGAA AGCTCTTGAT AAAGCTCAGC CTGGCAAAGT 
TGGAATCTAC AATGTTGGCA CAGGACATGG TAGATCAGTG AAGGAGTTTG 
TAGAAGCATG TAAGAGCGCA ACAGGAGCTA GCATCAAGGT TTCATTCCTT 
ACCCGGAGAC CAGGAGACTA TGCTGAAGTT TACAGTGACC CATCCAAAAT 
CCATGACGAG CTGAACTGGA CAGCCCGTTA CATTGATCTT CGCGAAAGCC 
TTTCAACTGC ATGGAAATGG CAGAAAGCAC ACCCGAATGG GTATGGATCG 
GCCTGATTCA GGGTTTAATA GATTCAGACT TAAGGTACAC AGATTCTCAG 
GTCCATGTGC AGAAATCATA TATCCTTCAG AAAATTGGTT CTTCAGCACA 
AACATAGTGC CAGGCACAGA AGTGTTCTGA ATTTTTTTGG CAGCATTTGG 
AAGAAGATAC AGAAAGAATG GCCCCTCTAT TCCTGGCTTA GGATCATACA 
TATAGTTTTT TTTTTTCCTT GACATTTTTT TTAATCTTTT CTACTCGTTA 
AAGCATAATA TAATAACCAA TAGAAAATGT GTTGTAGACA AGGTAGATAA 
CTATCATGTA TGAACGTTCA TGGTGTTGAA TGAAAGGATA TATGAATAAG 
TAGATGTTTG CTTATTAGTG GAAGTTAAAT TTCCATTTTG GCAAGCTCAG 
CGGTTAAATT TCTTGTATGT GAAGCAAGGG GTGACTGGGG ACAATGCATT 
GCTGTGCACA ACTCCTGGTC TCACTTGCAA AAACATTTCT TACATGTAAC 
TAGAGTACAA GTGGTTGGAT TATACCGTAT GTACATGAAC GTCAATTCGC 
C

Gene models with high sequence identity

AT1G30620.2 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 647.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	3.59998852907783e-60
HMMPanther	UDP-glucose 4-epimerase	0
superfamily	NAD(P)-binding domain	3.99998544139406e-93
HMMPfam	NAD-dependent epimerase/dehydratase	3.7e-49
HMMTigr	UDP-glucose 4-epimerase	0
HMMPanther	PTHR10366	0

See the detailed result >

AT1G30620.2

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary: encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.
Computational Description: MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G20460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR