K12739

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12739

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12739

Determination of introduced cDNA(s)

  • J033050N17 - Rice Full-length cDNAs - Original: J033050N17

    full reading [+] show sequence

    Nucleotide sequence: J033050N17 - full reading 
    GAGCCGCGTT CGCATCCGCC GCCGCAGCCG CAGCCGCCGC CGCCGACGCC 
    GACGAGGAGA GGAGGAGAGG GAAGGCGAGA GGGAGGTAGG TAGGTAGGCA 
    GTTAGCCATG TCGCCGGCGG AGCCGACGAG GGAGGAGAGC GTGTACAAGG 
    CGAAGCTGGC GGAGCAGGCG GAGCGGTACG AGGAGATGGT GGAGTACATG 
    GAGCGCGTGG CGCGCGCGGC GGGGGGCGCC TCCGGCGGGG AGGAGCTCAC 
    GGTGGAGGAG CGGAACCTGC TGTCCGTGGC GTACAAGAAC GTCATCGGCG 
    CCCGCCGCGC GTCGTGGCGG ATCATCTCGT CGATCGAGCA GAAGGAGGAG 
    GGCCGCGGGA ACGACGCCCA CGCCGCCACC ATCCGCTCCT ACAGGGGCAA 
    GATCGAGGCC GAGCTCGCCC GCATCTGCGA CGGCATCCTG GCCCTGCTCG 
    ACTCCCACCT CGTCCCCTCC GCCGGCGCCG CCGAGTCCAA GGTCTTCTAC 
    CTCAAGATGA AGGGCGACTA CCACAGGTAC CTTGCGGAGT TTAAGTCTGG 
    CGACGAGAGG AAGCAGGCTG CGGAGAGCAC CATGAATGCA TACAAGGCTG 
    CTCAGGACAT TGCTCTCGCA GATTTGGCTC CGACCCACCC CATAAGGCTT 
    GGGCTTGCAC TCAACTTTTC AGTGTTCTAC TATGAGATCT TGAACTCCCC 
    TGACCGTGCC TGCAACCTCG CGAAGCAGGC GTTTGATGAG GCCATATCAG 
    AACTGGACAG CCTTGGTGAA GAATCCTACA AGGACAGCAC TTTGATCATG 
    CAGCTCCTGC GTGACAACTT GACTCTGTGG ACTTCAGATG CCAATGATGA 
    TGGTGGTGAC GAAATCAAGG AAGCCGCAGC TCCAAAAGAG CCTGGGGATC 
    AGTGAGATGA ATTCGGACGC CAGTCTGATG CACCATCTGT TGTTGTTGGG 
    GCAATGGACA TTGATGTCTT CGGCTTTCAG TAGCTATCTT CTAGTACACG 
    AACTGTCGTC GCACCATCGC GGAGGAGACG ATGATGTTCT TAAATTACTT 
    AAGTAGTTCT GGGTCACGCT TTTGTTCAGT TGATAAATGA TGGCTGGATC 
    CTGGTTTTCT TGTTCCACGA TGCCAGCCAC AGGAAAAACC CTACTATTCT 
    GCACTGTTAG AATGCTGTTA TATTAACCAT GTTTGACAAG ACATTTTCAG 
    TATGTTTGTA TGACCGTCTT GGAAGTGTTT GGTTGAACCT GTCTCAGGGT 
    CTTTGGTCCA AGACATTATT CACCTGGCTT GCTTAACTCG TTTTAGAG

    Gene models with high sequence identity

    1. AT3G02520.1 [+] show detail - general regulatory factor 7
      E-value: 5e-104; Score: 375.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan 14-3-3 protein 0
    PatternScan 14-3-3 protein 0
    superfamily 14-3-3 protein 1e-101
    FPrintScan 14-3-3 protein 7.9e-88
    FPrintScan 14-3-3 protein 7.9e-88
    FPrintScan 14-3-3 protein 7.9e-88
    FPrintScan 14-3-3 protein 7.9e-88
    FPrintScan 14-3-3 protein 7.9e-88
    FPrintScan 14-3-3 protein 7.9e-88
    HMMPIR 14-3-3 protein 1.9e-176
    HMMPfam 14-3-3 protein 1.1e-112
    Coil coiled-coil 0
    HMMSmart 14-3-3 protein 4.3e-196
    Gene3D 14-3-3 protein 1.2e-105
    HMMPanther 14-3-3 protein 1.1e-200

    See the detailed result >

    AT3G02520.1

    Model type
    Protein coding
    Short Description
    general regulatory factor 7
    Curator Summary
    Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν).
    Computational Description
    general regulatory factor 7 (GRF7); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: nuclear envelope, chloroplast stroma, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 3 (TAIR:AT5G38480.1); Has 2692 Blast hits to 2682 proteins in 382 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 312; Plants - 765; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR