K12843

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12843

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12843

Determination of introduced cDNA(s)

  • J013060D13 - Rice Full-length cDNAs - Original: J013060D13

    full reading [+] show sequence

    Nucleotide sequence: J013060D13 - full reading 
    GATTCGCCGC CGCCGCCGCC GCCGGAAAAC CATGGGTATC GACCTCGTCG 
    CCGGCGGCCG GAACAAGAAG ACCAAGCGCA CGGCGCCCAG GTCCGAGGAT 
    GTCTACCTCA AGCTCATCGT CAAGCTCTAC CGCTTCCTGG TGCGGAGGAC 
    CAAGAGCCAC TTCAACGCCG TGATCCTGAA GCGGCTCTTC ATGAGCAAGA 
    CCAACCGCCC GCCGCTCTCG ATGCGCCGTC TCGTCAGGTT CATGGAGGGG 
    AAGGTACCTG ATCGCCATGC CATTTCGGGG GACCAGATCG CCGTGATCGT 
    GGGCACCGTC ACAGATGACA AGAGGATCTA TGAGGTGCCG GCGATGAAGG 
    TGGCTGCTCT CAGGTTCACC GAGACCGCGA GAGCACGGAT CATCAATGCC 
    GGTGGCGAGT GCCTCACGTT CGACCAGCTC GCTCTCCGCG CCCCGCTTGG 
    CCAGAACACG GTCCTCCTGA GGGGTCCCAA GAACGCTAGG GAAGCTGTTA 
    AGCACTTTGG CCCTGCTCCA GGAGTTCCCC ACAGCAACAC TAAGCCATAT 
    GTTCGCTCAA AGGGAAGGAA ATTTGAGAAG GCAAGAGGAA GAAGGAACAG 
    CAAGGGCTTC AAGGTATAAG TTGTGGCAGC TTTGGCACCA TTACACCAAA 
    CTGCTCATAT CAGTTAGACA TCACTGTTTT GGATGCCAGA CTTGCACTGT 
    TGTTTTGGAT GCTAGACTTA CACTGTTTTA GATGTCAAAA TATTGTGTTA 
    CTGACTTCAC AGGAACAATT AAATTGTTTA CCTCCTTTGC ACTTCAAGAT 
    ATTTGTTTGG CGTCTCGCAT TATGAATATA ATCTCCTTTA TTTATGAGGC

    Gene models with high sequence identity

    1. AT5G27850.1 [+] show detail - Ribosomal protein L18e/L15 superfamily protein
      E-value: 1e-84; Score: 309.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L18e/L15 4.2e-28
    PatternScan Ribosomal protein L18e, conserved site 0
    HMMPfam Ribosomal protein L18e/L15 9.4e-23
    Gene3D no description 1.9e-25
    HMMPanther Ribosomal protein L18e 8.7e-117

    See the detailed result >

    AT5G27850.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L18e/L15 superfamily protein
    Computational Description
    Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039), Ribosomal protein L18e/L15 (InterPro:IPR021131); BEST Arabidopsis thaliana protein match is: ribosomal protein L18 (TAIR:AT3G05590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR