K12938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12938

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12938

Determination of introduced cDNA(s)

  • J033040H02 - Rice Full-length cDNAs - Original: J033040H02

    full reading [+] show sequence

    Nucleotide sequence: J033040H02 - full reading 
    GAAACTCATC ACCCACGCGC TGCGAGACGC ACTGTTTCAG TTCGCGGTCA 
    AGTCCAGGAA GCTGGCGTCT CCGATGTTGC GGGCGTTGGG GCGCGCGTCG 
    ACGGGGCCGG TCACCGTCGG CGACGACGAG CTGGCGGCGC TCAGGTCCAT 
    GCTCCGCAGG GTCCACGCCG CGCTCCGCGA CGCCGACAGC CTGTCCGTCA 
    CCGACCACTC CGTCCGCCTC TGGCTCGCCG AGCTCGGCGA CCTCGAGTAC 
    CGCGCCGAGG ACGTGTTCGA GGAGCTCGAG TACGAGTGCC ACCGCGCCGC 
    GCAGCTGGAG GACCTCAAGA TCGACCTCCT GCGCGCCGCG GCGCTGGCGA 
    CGGGGAAGCG GAAGAGGGAG GTCGCGCAGC TGTTCGCCGC CGCGCCGGCC 
    GCGCGCCTCC GCCGCAAGAT CGACGACATT TGGGCGAGGT ACGAGGAGAT 
    CGCGTCAGAT CGGAAGAAGC TCCGGCTAAG GCCCGGCGAC GGCGCGGCAC 
    GGCCGGCGGT CGGTGCCCTC GTGCCGAGCA GCTCGCTCCC CCGTTGCCAG 
    ATCCACGGCC GGGAGCGCGA CCTCCAGAGG GTCGTCGAGA TGGTCTGCCA 
    AAGCCAGCCC GACGGCAGGA GAAACTACGC CGTCGTGGCA ATCGTTGGTA 
    TGGCCGGCGT TGGGAAGACG TCGCTTATGC AGCACGTCTG CGGCGAGGAG 
    GCCGTCGCGT CGCGTTTCGA CCTCGCGCTC TGGGTCTGGG TGTCCCAAGA 
    GTTCGATGTC GTCGGCGTGA CGGCAAAGAT CGTTGAGGCC ATCACCAGGT 
    CACGCCCCGA CTGCTCCGAG CTGAGCGCGC TCCACGGAAC CATGGTCGAA 
    CACCTTACGG GCAAGAGGTG CCTGCTCGTC CTCGATGACG TCTGGGATGA 
    CAACCCCAAC CATTGGGACA CCATCACCGC GCAGCTGAGC TTCTGCGCGC 
    CGGGGAGCAC AGTCGTCGTC ACGACCAGGA GCAGGATGGT CGCCAAGATG 
    GTTACCCCCA ATGTGTACCA TCTTGGCTGC TTGTCCGACG AACACTGCTG 
    GCTCGTGTGC CAGCGACGTG CATCGCACGG GTGCACCACC GCCACCATTG 
    ATGATGAGCT TACCAACATC GGCCAGCAGA TTGCAAAGAA ATGCAGAGGC 
    GTACCATTGG CAGCAGAGGC AGCAGGCACA GCCATGAGCA CCTCAATCAC 
    CAGGAAGCAC TGGACACATG TACTGAATAG CAACCTGTGG GCAGACAATG 
    ATGAGGCCAA GAACCATGTG CTGCCAGCAC TCAAGGTGAG CTATGACCAT 
    TTGCGCCATT GAAACGATGC TTCGCCTTCT GCTCATTGTT CCCCAAGAGC 
    TTCGTCTTCG ACAAGGATGC GCTGGTTCAG CTCTGGACAG CGCAGGGCTT 
    CATTGATGCC GGAGGAGAAC AGAGACCTGA AGATGTAGGC ACCGGCTACT 
    TCTATGATTT GGTAGCAAGA TGCTTCTTCC AGCCATCCCC ATCTCATGGA 
    ATCGATCAAG AGAAGTTTGT CATGCATGAT CTATATCAGG AGCTTGCACA 
    GTTTGTTTCA GGCAATGAAT GCAGAATGAT ACAACATATT GTTTCAGGCA 
    ATGAATGCCG GACGATACAG CAGAGTAACC TGAACCGAGC CGACAAGACA 
    TCGGCTCGCC ATTTGTCCAT TGTCAACAAT GAGTCCCATC CTGAGCAAGA 
    ACTATCATTG GACTCATTTT GTGGCCAAGA TCTGAGAACA TTCCTGTTTC 
    TTTCAAGATT GGAACAGATC ATCCATGGAG AAATGCCACT CAGAAGAAAG 
    ATTGCTCCAT ATGGACTGAT GACAGATTTT GAATGTCTAA GGGTTCTAGA 
    TTTAAGCAAC ACTGACATTG TGGAGGTACC AAAGTCTATT GGAAGCCTGA 
    TACATCTGAG GTACCTTGGT CTGGATAACA CTAGAATTCA GATGCTGCCG 
    GAGTCAGTAG GTGCTCTCTT CCACTTACAG ACAATCAAGC TTAACCATTG 
    TTCCTCCCTT ACTCAGTTGC CCCACGGCAG TAAGCTCCTG CAGAACTTAA 
    GATGCTTTGA GATAGCACAT TCCAATGTAC AGATGCCATC TGGGATCAGA 
    GCATTGACTA GCCTACAGAA GCTACCTGTT TTTGTCGTCG GAGATGGATC 
    TGCTGGATGC GGAATCGGAG AGCTGGATGA GCTGATAAAC ATCAGAGGAG 
    ACCTGCACAT TATAGGTTTA AGCAATCTTG ATGCTGCACA AGCTGCCAAT 
    GTCAATCTAT GGAAAAAGGA GGGACTTCAG AAGCTAACAC TCGAATGGTG 
    TGACATACTT CAGGATTCAG ACGTGACATT GCGTGATCTG CAGCCAAATG 
    AAGCAAACAG AGTACCAGAT TGTCGTTGCG TGCCACAACA GAATGACAGA 
    GCAGCTCAGG TGTTACAGTG TCTCAGACCA AATTCAAATC TGGAGGAGCT 
    CATCATCAAA GGTTATAATG GATCATCATT CCCATCATGG GTAGGGTCTC 
    TGCCTTTGGA CAGGTTAGCT TCTATAGAAC TAAAAGATTG CCAAAATTGC 
    GAAGAACTGC CGCCACTTGG GTGCTTGCCA TCCCTGAAAC ATGTTGTGAT 
    ACAGTCACTG CCAAGTGTCC AGCTAGTTGG ACCTGAATTT CTTGGCGATG 
    TTGGAGATAT CCCTTACAAC AACAGGGAGA AAGCCTATTT TGCTTTTCCT 
    GCATTGGAGT CTCTGAAGTT CAGGGATATG GGAGCCTGGG AGGAATGGTC 
    AGGTGTCAAG GATGAACACT TCCCAGAACT TAAGTATCTC AGCATTGTTA 
    GGTGTGGAAA GCTGAAGGTA TTGCCCAACT TCACTTCAGG ACCAAAGCAG 
    AGAATCAGGA ATTGTGAGAA ACTACTCCAG CCTCTATGCC AGGTATGTTC 
    TTCAAGTTCA AGTCAGATGA ATACCATCAA TTTTTCTTGC ATCGATTTTT 
    ATATAAGAGA TTTTTTTATA TGCAAATTTC GTTGTTCATC TGCTCTTGGA 
    TCATTTTTAC TATAGTCACA GCTGACAGCT GCAAATATCA TTTCTCTCTT 
    TTTTCTTATG GATTGCACAA ATATGCTCAT AATTGCTCAT CAGTTACGAC 
    CAAGAATCAT TAAATCATAT GAAATGAGCA TTAGACTTTT TGCACTCACA 
    AACAGGGTGA ATGAGGCAGA CTATTTCAGT TAACAGGGAC TTCTGGTTTA 
    CAATATAAAA ACTATTTTAG CCCATACTAC AATTTTTTTA TCATGGAATA 
    ATTAAACTAA AAATAATTTG TTCATTCTTC CCTGATCAGA ATATACACTG 
    GAATTTGATG GAATACATAC CACCTTCAAG TGAACTGTCG TACACATGCA 
    TGGCAGAAGG TGATATTTCA ATCCTAGAAG CTTCCTGTTC ATACAGTACA 
    TAGAACATTG GAAATGGAGG GAGGGGCACC AATTATTGTA AATGCTCATG 
    GATTGGTGCT ATTTTGTCAG AAAATCTTAT TTCCAGGATT GACATGAATT 
    TTTCAGTAAG TACACATCGT ATGAAATTGT TTTGTTCCAA ATGTACCCGA 
    TCAAGAATAT TCATTCACAC CAAAACTACT GAATGCATGT TCCTGGAAAA 
    CTGCAAAGC

    Gene models with high sequence identity

    1. AT3G14470.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 3e-97; Score: 146.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Leucine-rich repeat 0.4
    HMMPfam NB-ARC 5.5e-52
    FPrintScan Disease resistance protein 1.8e-13
    FPrintScan Disease resistance protein 1.8e-13
    FPrintScan Disease resistance protein 1.8e-13
    Gene3D no description 1.5e-10
    HMMPanther LEUCINE-RICH REPEAT CONTAINING PROTEIN 6.8e-12
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6.8e-12
    superfamily L domain-like 5.3e-30
    superfamily P-loop containing nucleoside triphosphate hyd 7.6e-15

    See the detailed result >

    AT3G14470.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Computational Description
    NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: protein binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT3G14460.1); Has 25652 Blast hits to 19792 proteins in 681 species: Archae - 38; Bacteria - 1467; Metazoa - 4997; Fungi - 304; Plants - 18213; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR