K12944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12944

Determination of introduced cDNA(s)

  • J033071P17 - Rice Full-length cDNAs - Original: J033071P17

    full reading [+] show sequence

    Nucleotide sequence: J033071P17 - full reading 
    GGAGAGCTCG CCATTTCTTC GATCTCCTCT CCTCTTCTCC TCCACCTCCT 
    CCTCGTGGCT TCGCATCGCG TGGAGCTCGT AGTGTGCTAG ATCTAGGAGG 
    AGGCGGCGAT GAGGGCGCGG AGGGTTGTCG CGGCGGCGGC GGTGCTGCTG 
    CTGTTCGCCG TTGTGGCGGT GGCGCGGCTC GACCTGGACG ACGACGGGGA 
    CGACTCGGAG GTGCTGGACG AGCTGCTCGC GGTGGACGAG GAGGAGGAGA 
    GAGGGGAGCT CGGTGGAGGA GGGGAGGCGG CGGCGGCGGA GGCGGTGCGG 
    CGGGCGCAGT CGATGGTGCT GGTGCTCGAC AACGACAACG CGCGGCGCGC 
    CGTGGAGGAG AACGCGGAGG TGCTCCTGCT GGGCTACGCG CCGTGGTGCG 
    AGCGCAGCGC GCAGCTCATG CCGCGGTTCG CCGAGGCCGC CGCGGCGCTG 
    CGCGCCATGG GGAGCGCCGT CGCGTTCGCC AAGCTCGACG GGGAGAGGTA 
    CCCCAAGGCC GCCTCCGCCG TCGGGGTCAA GGGGTTCCCC ACCGTCCTCC 
    TCTTCGTCAA CGGCACCGAG CACCAATTCA CTGGCCTCCA CACCAAGGAC 
    GCGATAGTTA CTTGGGTAAG AAAGAAGACT GGTGCACCAG CTAGTAGGAT 
    TCAGTCAAAG GATTCCGCTG AGGAATTTCT GAAAAAGGAT CAAACTTTTG 
    CTGTTGGTCT TTTCAAAAAT TTTGAGGGAA CAGAATATGA AGAATTCGTG 
    AAAGCAGCAA CCTCAGAAAA TGAAGTGCAA TTTGTCGAAA CCAATGATAG 
    GAATGTGGCC AAAATTCTTT TTCCTGGTAT TGCATCTGAA GAGCAATTCC 
    TGGGCCTTGT GAAAAGCGAG CCAGAAAAGT TTGAGAAGTT CAACGGGGCA 
    TTTGAAGAAA AGGAGATAAT TCAATTTGTG GAGCTTAACA AGTTCCCACT 
    TATTACTGTA TTCACTGATC TCAACTCTGG TAAAGTTTAT GGGAGCCCTA 
    TTAAGCTACA GGTCTTCACC TTTGCAGAGG CTTATGATTT CGAAGATCTT 
    GAATCTATGA TCCAAGAGGT TGCCAGAGGA TTCAAAACAA AGATAATGCT 
    TATATATGTG GATACTGCTG AAGAAAAGCT TGCTAAACCA TTCCTGACTC 
    TCTATGGACT CGAACCAGAA AAACCTACTG TGACAGCATT TGATACCAGC 
    AAAGGTACCA AATATCTGAT GGAGGCAGAA ATTAACGCGA AGAACCTACA 
    GGACTTCTGC TTAAGCCTTC TGGAGGGTAC ACTTCCGCCA TACTTCCGAT 
    CAGAACCAGT ACCAGAAGAA AAGGGACCTA TTGAAAAGGT TGTTGGCCGT 
    ACATTTGATT CTTCAGTTCT AGAAAGTCCT CAAAATGTGT TCCTTGAGGT 
    TCATGCACCT TGGTGTGTTG ACTGTGAGGC CATAAGTAAA AACGTGGAGA 
    AGTTGGCCAA ACATTTCAAT GATTTGGGCC AGACTAATCT TAAATTTGCA 
    CGCATAGATG CTTCTGTGAA TGAACATCCC AAATTGCAGA TAAACAACTA 
    CCCTACACTG TTGCTATATC CTGCCCAAGA CAAAAGCAAC CCGATAAAAC 
    TTTCAAAGAA ATCAAATCTG AAGGACATGG CAAAATTCGT CAAGGAGAAG 
    CTGCAAATTG CGGATGTCGA AACAGTAGCC GCTGGTGACA TTGTCAAGGA 
    TGAGCTATAG TAGATTTCTC ACAGCTTTCG GGCATGCTTT GTGCAGTGAA 
    TGAAAGTAAC AGCATGCTTG CATTTTGCTG GAATGCTTTC ACACCATGCT 
    TGTCTTGGGT TGCAATGTAC CATTTGAGAT AAGGAAATAG AATAGGAAAT 
    GATCAAACGG GTATTTAAGT TGAACTATAT GACCTTCCAG ATTTACTTAC 
    CGTCGCAGCA TCAGCTGTTC CTTTTAAAGA TGTGATTTAC TATACATGTT 
    ATTAGTTGTT GATAACAAGC TACATTTGTT TGTTTGTTGA GCTGTGACTT 
    GTAGCATTGT TCTGTAACAT AAAACTACAA ATTCTGTCC

    Gene models with high sequence identity

    1. AT3G16110.1 [+] show detail - PDI-like 1-6
      E-value: 2e-130; Score: 463.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN DISULFIDE ISOMERASE 2.7e-75
    HMMPfam Thioredoxin domain 3.3e-14
    HMMPfam Thioredoxin domain 3e-14
    ProfileScan Thioredoxin-like 9.583
    ProfileScan Thioredoxin-like 10.139
    ProfileScan Semaphorin/CD100 antigen 9.319
    Gene3D Thioredoxin fold 5.9e-21
    Gene3D Thioredoxin fold 4.3e-20
    Gene3D Thioredoxin fold 3e-15
    superfamily Thioredoxin-like fold 7.3e-23
    superfamily Thioredoxin-like fold 1.8e-20
    superfamily Thioredoxin-like fold 2.4e-14
    superfamily Thioredoxin-like fold 7.2e-11

    See the detailed result >

    AT3G16110.1

    Model type
    Protein coding
    Short Description
    PDI-like 1-6
    Curator Summary
    Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).
    Computational Description
    PDI-like 1-6 (PDIL1-6); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-5 (TAIR:AT1G52260.1); Has 9564 Blast hits to 7390 proteins in 1532 species: Archae - 71; Bacteria - 3133; Metazoa - 2543; Fungi - 813; Plants - 1159; Viruses - 1; Other Eukaryotes - 1844 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR