K13118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13118

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13118

Determination of introduced cDNA(s)

  • J023013E16 - Rice Full-length cDNAs - Original: J023013E16

    full reading [+] show sequence

    Nucleotide sequence: J023013E16 - full reading 
    GTGGCAGGCA AGGGGAGGGG CAGGAAGAAG GGAAGAATTG AAGAGGCTGA 
    GGCTGTTGGA TTGGAAACCG TTTCCAATTC TCCATCCTCT CTATCTTCCT 
    CTCTTCCTTC TCCTCCGGTC CCTCTCTCTC TCCCCCCTCC ATCTCCATCT 
    CCTCTCTTGT ATGTATGTAT GTATCTTAAT TGTTGCAGCT AGCTAAGAAC 
    ATCAATCAAA TTCAAATATT ACATACATAA GCCTATTGAT TGATTTGCTT 
    GCTGCAGTTA GCCTACTTAC GTGTATGCAT GTCAAAACAA GACGAAATAA 
    CAACAGGCAT GCATGTATGT ATGCTTATTT TGCCGTGCTA GACGGCTTTT 
    GATTCGTCTT CTTTGATGGG CATTCATCCC TTTCAGCTCC AACCCCTACA 
    GTTGATGCTA TGGTTGGGAA TAGGATATGG TTTGGGGGCC TTTTCACCAG 
    CTCAGGTAGA AGGCGCCAGA TCAATGCTGA GAAGACCTTT GAGCTGAGCC 
    CTGTTCAGGA GCAACGTTTG CAAAAGCTGA AGGAAAGACT AAATATACCT 
    TATGATCAAA CTCGGAGAGA TCATCAGGAA GCTCTCAGGG CTCTGTGGAG 
    TGCTTCATTT CCGGATGCAG AGCTGTCAAG CTTAATTTCA GAGCAGTGGA 
    AGGACATGGG ATGGCAGGGC CCAAACCCAT CGACTGATTT CAGGGGCTGT 
    GGATTTGTGG GACTTGAGAA TCTTCTCTTC TTTGCAACAA CATATCCGGC 
    TTCTTACCAG AGGCTGCTTC TGAAGAAACA AGGGATGAGA GCCACATGGG 
    AGTACCCCTT TGCAGTTGCT GGTGTTAACG TCTCATACAT GTTGATCCAG 
    CTGCTGGAGC TCAACGCAGA ACGGCCCAAG TCTTTGCCAG GGATTAACTT 
    TATCAAAGTG CTGTCAGAAC ACGAAGAGGC ATTTGACGTC CTGTACTGTA 
    TAGCTTTCGA GATGATGGAT GCCCAGTGGC TGGCAATGCG AGCATCCTAC 
    ATGCAGTTCA AAGACGTGCT GGAAGCAACA AAGCAGCAGC TGGAGAGAGA 
    GCTATCTCTG GAGGACGTCA ATGGAATCCG TGACATACCA GCTTACAACC 
    TTTTGTACAA GTAGCTAGCT AGGGGAGGCT CAAGAAAACA TAAACAGAAA 
    CCTTCTTGTA AATTGCATAT CAGCATGCAT GTTTTATGTA CTGCACCCAA 
    GAGAGAAAAA GGCAGACTTT TACATTTATA CACAATAATT TTATTTATAC 
    ACACTTATAA GTTTGACC

    Gene models with high sequence identity

    1. AT1G03620.1 [+] show detail - ELMO/CED-12 family protein
      E-value: 1e-92; Score: 337.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Engulfment/cell motility, ELMO 28.836
    HMMPanther CELL MOTILITY PROTEIN RELATED 1.3e-120
    HMMPanther ENGULFMENT AND CELL MOTILITY 1.3e-120
    Coil coiled-coil 0
    HMMPfam Engulfment/cell motility, ELMO 8.7e-52

    See the detailed result >

    AT1G03620.1

    Model type
    Protein coding
    Short Description
    ELMO/CED-12 family protein
    Computational Description
    ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1); Has 828 Blast hits to 828 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 41; Plants - 178; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR