K13208

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13208

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13208

Determination of introduced cDNA(s)

  • J013156N12 - Rice Full-length cDNAs - Original: J013156N12

    full reading [+] show sequence

    Nucleotide sequence: J013156N12 - full reading 
    GAAAAGGAGA GAAGAGAAAA AAAACTTTGG GCGAGAGGAG AGGAGGAGGA 
    GGAGGAGGAA GAAGGCGCAG TGAGATCTCC GATCCTTCTA GAAGCTTCTG 
    GAATCGCGCG GTCCAGGTAG AATTATACAC TTGAGGGGGC TGATGCGTGG 
    TGGTGCGCCG CCGGAGTGGT AGGTGGCGGT CGGGGGGAGT GGGAACTTCT 
    AGAAGGGCGT GTCGTACGTG TGCGAGTGGG TTGGGAGTCC TCTGGATTTA 
    TCGGTTCGTC GATCTCGCGG GAGTAGTAGA TGTCTCTGGA TGCATGCGTT 
    GGTGGATAAT AGTTTGATGG GGTCATCTCC GCGTTGGATA GCAATTAAGG 
    AATAGGAAGA ATATCTCCAG CAAGACTTTC ATCTGCTTAT CATCAGTATG 
    TCCATCGAAG AGAGAACATT AAGTTTGATA AACAAGACCA CTGCGTTAAA 
    TCCAAATGCA CAAGAATTTG TACCTTCATC CCTCAGATCT ATCAATGATG 
    TTTCAAATAG ATCAGACACA TCCAGGATTT CTGTATCAGG ATACTCCAAA 
    GACACTATTG CAGATCAACA AGATCCTGTT ATACCAAGTA ACCCTGATGA 
    AGAAGCACAT CGGTACTGGC AAGAACAGCT TCCAGATGAT ATTACCCCTG 
    ATTTCAAAGT TCTGGGACAA GATGAGATGC CTGGACCTGA TAATATTTCA 
    CTCACTGGCT TGTCAATAAA TGATAGCATT GGTGCTTCAC TATTTTCTCC 
    AAACCAGACA TCGAATTTGC AACACCGTGC TTCTCCTTTT ATTAGGGACA 
    CTCTGAGCAC ACGATCAAAG ATCGAGTTTC CTAGCCCAAC TTATGTAGAA 
    GAACAGTCAA GAGCTACTAT TATGAGTCCA ACTGCAAGCG CTATGAGTCC 
    AACTGCGGCT CCGTGGGTAA AAACAGTAAG AAATGGTGTG CAATACAATG 
    CAAACAGAAG GGATGCCAGC CATTACAATG GAGATTCTAG CATTGGAGCT 
    CCAGTGCAAA ACCTTACTGA TGCATACTTC GGAAGCAGGC GCAGCTTTAG 
    CTCAACTATG GATATCATGA GTCAGCTGGA GAATAAAGTT GATGGACGAT 
    TCAATCAGAA TCTGAGGTCA CTGTCGTTTG GACATTCAAG TCCTCCATCA 
    CCAGCATCAT ATGGTCAAAA TGGTCTTGCA AACTATAACA AAGAAGCTTT 
    TGGTCTGGCA AACAATACAT ATAGATCCCA CTCAGCTGTA CTCGCAGATG 
    ATATACTTTC CCCTTCAGCT GGTCGGGAAC ATATTTCTCT GGATGCTCCT 
    AGGGGGAGGT ACAATACAAC TAATTTGCCT GTTTCTGGTC TTGGTTCAAG 
    CAGAGGCTCT CAGTTCATGG CAAGCTCATT CAATGGCAAT CATGACATAG 
    TCTCAAACAA CACGCTGCAA AATATAGCTG GAGTTCAAAC AGGACCTGCT 
    TGGCTTGAAG CTGATACTGC AGCAAACATG TTTTTGGAAT CAAAGGATGA 
    AGCTCATGAT TTTGCAAGCC TACGGCATGC GCTTCTGGAA CAGGATAGGC 
    AGGTTCTTTT AACTGGTGCC AATCCTTTAG CAAAGGAACT AAACATCAAG 
    GAGCTTTACA ATTTGCAAAG CAGACTAGCT CAGGAAAAGG CTAGAGATGT 
    ATATCGCCAA AGATTTCAAA TGCCAGAATT TCAAGGCCTG GTTCAGGAGC 
    AAAATACCCC AATTGACCTG TGTGGTCTTC ACGTAAGCGA GGCGATACAC 
    GCCCTGAACT ATGAGCTCAA CAACCGGCGG AAGATTGCTC GATCCACAGG 
    CCGTCGTCTC CAGGTGATCA TAATATCAAG CACACGTACT CCGGCGAGGC 
    TGACCGCCGC CGTCGAGCAG TACCTCCTGG AGCACGGCAT TCAGTATACG 
    CAGGCACAGC CGGGCCTTTT CCGTGTCCTG TTACAGTGAA GTAACAGGAT 
    GGTAGGCTCA TCATGTTTGT GTACACCTTT GAAAGAAGAA GAAAAAAAAG 
    AGGAGGAACA AAAAAGAATT GACCCCTGTA CTACTGTATA TGGCAGAGAT 
    GAGTAGTACT AGCAGAATAG AAATTTGAAA TAGCTGTTGT AATATTCGTA 
    TAGCAAGGCT TTTTTTTTTG TCAGCAAAAA ACGTTGTAAA ATTTGCGGAA 
    TTAGGCGATA TGTTCTTCC

    Gene models with high sequence identity

    1. AT2G26280.1 [+] show detail - CTC-interacting domain 7
      E-value: 2e-56; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Smr protein/MutS2 C-terminal 14.786
    HMMPfam Ataxin-2, C-terminal 8.1e-06

    See the detailed result >

    AT2G26280.1

    Model type
    Protein coding
    Short Description
    CTC-interacting domain 7
    Curator Summary
    smr (Small MutS Related) domain-containing protein mRNA, complete cds
    Computational Description
    CID7; FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative (TAIR:AT5G58720.1); Has 309 Blast hits to 309 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 126; Plants - 79; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR