K13243

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13243

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13243

Determination of introduced cDNA(s)

  • J023139I22 - Rice Full-length cDNAs - Original: J023139I22

    full reading [+] show sequence

    Nucleotide sequence: J023139I22 - full reading 
    GAGCCTCCTC CCATCACCGA GGAGAGAGAG AGAGAGAGAG AGTAGTGAGA 
    GAGGAAGACG AGAGAGCCGC CTCCGCGGCC ATCGCCGCCG CCGCAGCAGC 
    GGGGCCACTA CCCCGACTGC CCCCTCCCCT CCTCCCATGG CCGCGATGCC 
    AGGTGGGCCC GACCTTGCCG GGGCCGGTGG CGCCGTCGCC GTCGCCGTCG 
    ACGCGATGCA GGTCGACGAC CCGCCGCGTG CGTCCGCCGA GGAGAAGCAT 
    GGTCCCACTA TAATGGGAGG AAATGATCCA GTCACAGGTC ATATAATTTC 
    AACTACTATT GGAGGGAAGA ACGATGAGCC CAAAAGGACT ATTAGCTATA 
    TGGCTGAACG AGTTGTTGGA ACTGGATCCT TTGGTGTTGT ATTCCAGGCA 
    AAATGCCTTG AGACTGGTGA AACTGTTGCC ATTAAGAAGG TCTTACAGGA 
    CAAACGATAC AAGAACAGAG AGTTACAGAT AATGCGATCA ATGGATCATT 
    GCAATGTCAT CTCCCTAAAG CATTGTTTCT TCTCTACCAC AAGCAGAGAT 
    GAACTTTTCC TTAACTTAGT CATGGAGTTT GTTCCCGAGT CACTTTATCG 
    TGTCCTGAAA CACTACAAAG ATATGAAGCA GAGGATGCCA CTTATATATG 
    TCAAACTTTA CATGTATCAG ATATTCCGCG GATTAGCTTA CATTCACACT 
    GTTCCTGGAG TTTGTCACCG AGATATAAAG CCACAAAATA TCTTGGTTGA 
    TCCTCTTACC CACCAAGTGA AGGTCTGTGA TTTTGGGAGT GCTAAAATGC 
    TGATTAAAGG TGAAGCAAAT ATATCTTACA TATGCTCACG TTACTATCGT 
    GCTCCTGAGC TCATATTTGG TGCAACTGAG TACACAACAT CAATTGATAT 
    ATGGTCTGCT GGATGTGTTC TTGCTGAGCT GCTTCTTGGT CAACCTCTGT 
    TTCCTGGTGA AAGTGCAGTG GACCAGCTTG TTGAGATAAT TAAGGTTTTG 
    GGTACTCCAA CGCGAGAGGA AATCCGTTGT ATGAATCCCA ATTACACAGA 
    ATTCAAATTT CCGCAGATAA AAGCATGCCC ATGGCACAAG ATCTTCCACA 
    AGCGAATGCC TCCCGAAGCA ATAGATCTTG TGTCCCGTCT CCTTCAGTAT 
    TCGCCAAATC TGCGATGTAC TGCGCTGGAG GCATGTGCTC ATTCATTTTT 
    TGATGAGTTA CGAGAACCAC ATGCAAAACT GCCAAATGGC CGTCCGTTTC 
    CGCCTCTGTT CAACTTTAAG CAAGAATTAG CAAATACACA CCCAGAGCTC 
    GTGAGCAGGC TGTTACCAGA ACATGCGCAG CGGCATTCAG GATTTTAATT 
    CATTGTTTTG CACTGGACCA TAGGACGAAG TGTGGTATGA CGACATTTAC 
    ACTTGTCTGC TCATACCTGT GTATGCCAAA GGGCAAATAA CATTTCTCAC 
    CTTAAGGTTT TAGAACCTAA TCATCTTCTT GCAAAGCTGA AAATGGGCTC 
    CCCTGACAAG GTAGTGTGCG GTGTGCCGTA CTACAATCAA ATGTTAAACC 
    TTGAGGAGGC CATTGTGTCC AGTGTTCTGC CAAGAGGAGC CCGAATAGCT 
    GGAGGGATGG TGGGTGTATT GTTAAGCTGT GGAGGGTGAC TTTTATGTTG 
    AAACTTCCTT TGCTGTATGT TCCATGCCTG TACCGCACCT GCATCCATTC 
    AACCTCATAT TCACAACTGA TGTAATCATG ATAAAATTGA ATGTGTCAAT 
    GATGGTCGAT TCGTATGCCA TTATATGCGA ATTGACTGTT GTTTCTATTA 
    TGATCAACTT ATCCTGTTAT TACTG

    Gene models with high sequence identity

    1. AT4G18710.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 658.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 1.3e-85
    HMMPfam Serine/threonine-protein kinase-like domain 3.3e-63
    HMMSmart Serine/threonine-protein kinase domain 9.5e-88
    HMMSmart Tyrosine-protein kinase, catalytic domain 9.6e-12
    Gene3D no description 0.00013
    Gene3D no description 4e-65
    HMMPanther GLYCOGEN SYNTHASE KINASE 3-RELATED (GSK3) (CM 9.9e-179
    HMMPanther CDC2, MAP KINASE-RELATED 9.9e-179
    ProfileScan Protein kinase, catalytic domain 43.962
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT4G18710.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Curator Summary
    ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.
    Computational Description
    BRASSINOSTEROID-INSENSITIVE 2 (BIN2); FUNCTIONS IN: protein kinase activity, kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SHAGGY-related protein kinase dZeta (TAIR:AT2G30980.1); Has 110203 Blast hits to 108729 proteins in 3938 species: Archae - 86; Bacteria - 11182; Metazoa - 39944; Fungi - 12089; Plants - 27852; Viruses - 403; Other Eukaryotes - 18647 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR