K13307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13307

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13307

Determination of introduced cDNA(s)

  • J023076O15 - Rice Full-length cDNAs - Original: J023076O15

    full reading [+] show sequence

    Nucleotide sequence: J023076O15 - full reading 
    GCAAGACCAG CTTCATGGTT AAGTATGTTG GGGACGACGA GGAGCAGAAC 
    GGCTTGCAGA TGACGGGCCT GAATCTGATG GACAAGACCT TGGCAGTTCG 
    GGGAGCTCGA ATTGCCTTCA GCATTTGGGA TGTGGCAGGA GACAGCCAGT 
    TCCTCGACCA CGTCCCGATC GCGTGTAAGG ACGCCGTGGC GATCTTGTAC 
    ATGTTCGATC TCACGAGCCG GTGCACGCTT ACTAATGTTA TAGATTGGTA 
    TGAGAGGGCA AGGAAATGGA ATAAGACGGC TATTCCAATC CTAATTGGGA 
    CGAAGTTTGA TGACTTCGCT CAGCTTCCTC TTGAGATGCA ATGGACCATC 
    GTTAACGAGG CCAGGGCATA CGCGAGAGCG ATGAAGGCGA CCCTCTTCTT 
    CTCCAGCTCG ACGCACAACA TCAACGTGAA CAAGATCTTC AAGTTCATCA 
    CGGCCAAGCT CTTCAACCTG CCGTGGACGG TGGAGCGCAA CCTCACCGTC 
    GGCGAGCCCA TCATAGACTT CTGAAGACTC TACACCCTTA CACTGACAAA 
    ATGCTAGGCA AAAAAACGTA CACGAGCCCT TCCTTCCCTC CCCTTCGTCG 
    TCTTCCTCCT GACCTTTCTC TCCCGGTAAT GGAGGCCGGC CATGGCCATG 
    GCTGAGCAGA ACTGAGCTCT TGCATGTACA TATAGGTG

    Gene models with high sequence identity

    1. AT5G54840.1 [+] show detail - Ras-related small GTP-binding family protein
      E-value: 8e-71; Score: 263.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 3.5e-27
    ProfileScan Small GTPase 10.286
    HMMPfam MIRO-like 4.4e-19
    HMMSmart Ras small GTPase, Rab type 0.0004
    FPrintScan Ras GTPase 8.1e-05
    FPrintScan Ras GTPase 8.1e-05
    FPrintScan Ras GTPase 8.1e-05
    HMMPIR GTPase, Tem1 1.1e-95
    HMMPanther SGP1 MONOMERIC G-PROTEIN 5.6e-55
    HMMPanther RAS-RELATED GTPASE 5.6e-55
    Gene3D no description 1.2e-22

    See the detailed result >

    AT5G54840.1

    Model type
    Protein coding
    Short Description
    Ras-related small GTP-binding family protein
    Curator Summary
    Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes.
    Computational Description
    SGP1; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Mitochondrial Rho-like (InterPro:IPR013684), GTPase, Tem1 (InterPro:IPR017231); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G21700.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR