K14033

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14033

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14033

Determination of introduced cDNA(s)

  • J013000M21 - Rice Full-length cDNAs - Original: J013000M21

    full reading [+] show sequence

    Nucleotide sequence: J013000M21 - full reading 
    GAAGTTCTCA TCGAGGGTTT TCCTCTCTCT CTCTCGCATC GCATCCATCC 
    CCTCGTGTCG CCGCCGGCGG AGGCTGCGGC GAGCCTTCAC CCCCCACCCG 
    CCCACCGCCG GCGAGCCACG GCGTGGGCGA CCTCCTCTCC TCTCCCGATC 
    CCCTCTCGCC CTTAGGTAGG GGCTTCTCCC CAGTCCCCAC CACACGCGCG 
    TGCGTGGCCG ACGAGCACCC CAGGTTCGGA TCGGATGGAA GACCAGAAGA 
    AAAATGCAAA ACCAGAGGGG TCTTCTGGCT CGCAAAGGGG AGCTCCCCCG 
    GCACCTGATG CAGGCCTTCC CAATCCTTTT GATTTTTCTC AGTTTAGCAA 
    CTTGCTCAAT GATCCATCTA TAAAGGAGAT GGCAGAGCAG ATTGCAAGCG 
    ACCCTGTGTT CACCCAGATG GCAGAGCAGC TGCAGAAGAG TGCTCATGTG 
    ACCGGGGAAC AGGGTGGCCC TGCATTGGAT CCTCAGCAGT ACATGGAAAC 
    AATGACACAA GTCATGCAAA ACCCTCAATT CATGTCAATG GCAGAACGTC 
    TTGGGAATAC TCTTATGCAG GATCCTGGAA TGTCCAGTAT GCTCGAGAGT 
    TTGACTAGTC CTTCTCATAA GGAGCTGCTT GAAGAGCGGA TGTCCCGTAT 
    TAAAGAAGAT CCCTCTTTGA AGGGGATTCT TGATGAGATA GAGAGTGGTG 
    GTCCATCTGC TATGGTGAAG TACTGGAATG ACCCTGAAGT TCTTCAAAAG 
    ATTGGTCAGG CTATGTCAAT TAATTTTCCA GGAGATGCTG CTACTTCCAC 
    TACATTGTCT GGACCTGAAG AAACTGAAGA GGATGGTGGA GATGATGATG 
    AGTCCATTGT CCATCATACT GCCAGTGTTG GCGATGCGGA GGGTCTGAAG 
    AAAGCTTTAG AGGATGGAGC AGACATGGAT GAAGAAGACG CTGAGGGAAG 
    AAGGGCCTTA CATTTTGCGT GTGGTTACGG TGAGTTGAAA TGCGCAGAGA 
    TCCTTCTGGA GGCAGGTGCT GCTGTAAACG CACTGGATAA GAACAAGAAC 
    ACCCCACTGC ATTACGCTGC TGGATATGGT CGGAAAGAAT GTGTGGATCT 
    TCTGCTGAAG CATGGCGCTG CTGTCACGCC CCAGAATCTG GACGGGAAGA 
    CCCCCATCGA GGTGGCCAAG CTGAACAACC AGGATGAGGT CCTCAAGGTG 
    CTCGAGATGG ACGCTTTCCT ATAAAGAAAC CAATGCCAAA TCTCACGCTC 
    ATCATCACCG GCTCGTCGCT TTACAGTTCA GATTTTTACT GCATACCCAA 
    ATCATCATCG ACTCTTTTAG CTTTGGTTTT GGTGTGGTGG TGGTACATTC 
    GTTGAATCGT TGCTATGTTT GGTGCTCCGA TTTGTAATCT GTTTCACTTC 
    CCCGTTACAC TGCATCACTC CGTTTCATCC TTTGTATTCC TATGTTGCTG 
    AGTCTGGTGT TGCAGACGTT GCTCC

    Gene models with high sequence identity

    1. AT4G35450.3 [+] show detail - ankyrin repeat-containing protein 2
      E-value: 7e-99; Score: 358.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ankyrin repeat-containing domain 4.4e-36
    ProfileScan Ankyrin repeat-containing domain 0
    Gene3D Ankyrin repeat-containing domain 3.89999861795218e-32
    HMMSmart Ankyrin repeat 27.0000035356386
    HMMSmart Ankyrin repeat 0.00990000174328939
    HMMSmart Ankyrin repeat 3.89999861795218e-05
    HMMPanther PTHR18958 1.10000150671643e-48
    ProfileScan Ankyrin repeat 0
    ProfileScan Ankyrin repeat 0
    HMMPfam Ankyrin repeat 0.00850000000000001
    HMMPfam Ankyrin repeat 1.3e-05
    HMMPanther PTHR18958:SF152 1.10000150671643e-48

    See the detailed result >

    AT4G35450.3

    Model type
    Protein coding
    Short Description
    ankyrin repeat-containing protein 2
    Curator Summary
    Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
    Computational Description
    ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85365 Blast hits to 29004 proteins in 1328 species: Archae - 144; Bacteria - 6951; Metazoa - 44906; Fungi - 6142; Plants - 3755; Viruses - 871; Other Eukaryotes - 22596 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR