K14120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14120

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14120

Determination of introduced cDNA(s)

  • J033108E06 - Rice Full-length cDNAs - Original: J033108E06

    full reading [+] show sequence

    Nucleotide sequence: J033108E06 - full reading 
    GTTTGGGCTC CTTCCTTTCC CCATTCTCAC TCTCGGCCTT CCTTCCACGG 
    CAGCGCCTCC CACTGCGCCT TCGCCGGCGG CGGAGGAGGA GGGAGGTGCG 
    GCCATGGGTC ACGGTGTCAG CTGCGCCCGC ACCGGCGACG AGCACGACTT 
    CTTCCGGGCG GCGCAGCTCG GCGACCTCGA CGCCCTGGCC GCCCTCCTCG 
    CCGCCGACCC TTCCCTCGCT CGCCGCGCCA CCCTCTACGA CCGCCTCTCC 
    GTCCTCCACA TCGCCGCCGC CAATGGCCGC ATCGAGGTGC TCTCCATGTT 
    CTTGGATCGC GGGGCGCCGC CGGACGCGGT GAATCGGCAC AAGCAGACGC 
    CGCTGATGCT CGCGGCCATG CACGGCAAGA TCGACTGCGT GCTCAAGCTC 
    CTCCAGGCCG ACGCAAATAT CTTGATGTTC GACTCGGTGC ACGCGAGGAC 
    CTGCCTCCAC CACGCGGCGT ACTACGGCCA CGTCGACTGC CTGCAGGCCA 
    TCCTCGCCGC CGCGCAGACC ACGCCGGTGG CCGACTCATG GGGTTTCGCC 
    CGGTTCGTCA ACGTCAGGGA CGACCACGGC GCCACTCCGC TGCATCTCGC 
    GGCCAGGCAG GGGCGGCCGG GGTGCGTGCA GGTGTTGCTG GAGAACGGCG 
    CCATTGTGTC GGCTTTGACA GGATCATATG GCTTCCCTGG AAGCACGTCG 
    CTTCATTTGG CTGCTCGTAG CGGGAACTTG GATTGCATCA GGAAGCTGCT 
    TGCCTGGGGA GCTGATCGGC TCCAAAGGGA TTCGGCTGGG AGAATTCCCT 
    ATTCTGTTGC GCTGAAACGG AACCATGGAG CATGTGCAGC TTTGCTGAAC 
    CCTACATCAG CAGAGCCCAT GGTGTGGCCA TCCCCACTTA AGTTCATCAG 
    TGAGCTTGAA CCAGAAGCTA AGGCTCTCCT GGAAGCAGCT CTGATGGAAG 
    CCAACAGGGA GAGGGAGAAG AAAATCCTGA ATGGCACAAA GTACTCCCTG 
    CCATCCCCTT CGCCCGGTGA TGACAGTGCC GATGACGATG CATGCTCAGA 
    GGTGAGCGAC ACGGAGCTTT GCTGCATCTG CTTCGACCAG GCTTGCACCA 
    TTGAGGTGCA AGACTGTGGA CATCAAATGT GTGCACCGTG CACGCTGGCA 
    CTGTGCTGTC ACAACAAACC CAATCCGACG ACCCTGACAC CGCCCTCACC 
    GGCCTGCCCA TTCTGCCGGG GCAGCATCTC ACGGCTGGTG GTGGCCCAAA 
    CAAGGTCTGC TTGTGATCCT GACAAGCAGT CATCCCTGCA GCTCACCCGG 
    AAGCGGTCGC GTCGATCTCA CAACCTCAGT GAGGGCAGCA GCAGCTTCAA 
    AGGGCTACCT TCGGCCATGG GCTCCTTCTC AAAGCTTGGC CGTGGCTCGA 
    GCCGCATGGC GGACAGTGAC AGCAGCAACC TGGACAAGCC TGAGCACGAT 
    CTATGAAAGC AGAACAACGC ACGGACAATC GCCGCATCAT CCTCAAAACA 
    TCCGTTGGTA TCAGAAACCC AGATGAAAAT CCAATGGCTA ATTTGGAGCA 
    ACTTTGATCC ATGGAAAGTT AAATAGATAG GGACTAAATA AGTAGAACCC 
    TCCACTCCCC ATTGTCTGTG TGCCCACCCT ATTTTTCGGC TTGCCGGGTT 
    AAGCTTAGCA TATGCATAGG AGCTCTGAAA GACCAGAGAG AGAGTGAGTG 
    AGTGAGTGAG AGCAATTCAT CATCAATCAC ACAGTGAGTG TTGGTGTGGT 
    TAAGGGATGC ATGCAGCAGA GATGTGAAAC GGGGTTCATG TTCGTCACCT 
    CTAAAGTTAG CCTGCCATGG CATGTGAGCT CTGCGCCGGC CTGACCCCTC 
    CTCCTCTGTG TGATGAATCA TGCCCCCATT TTTGGCCCTT GTCTCGTGTT 
    ATAATGGTGC GAGTTCATGT CCTGGTGATG CTGCAGCCAT CAGCAGGGTG 
    GTCCATTGGA TCGCCATGAA TTCAGCAGCT GCGGTCTCTG CCTATGTGAT 
    GACATTGTAT GTACCGT

    Gene models with high sequence identity

    1. AT2G28840.1 [+] show detail - XB3 ortholog 1 in Arabidopsis thaliana
      E-value: 4e-138; Score: 489.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ankyrin repeat-containing domain 9.9e-57
    superfamily RING/U-box 1.9e-07
    ProfileScan Ankyrin repeat 10.953
    ProfileScan Ankyrin repeat 9.725
    ProfileScan Ankyrin repeat 12.716
    ProfileScan Ankyrin repeat 12.235
    ProfileScan Zinc finger, RING-type 9.362
    ProfileScan Ankyrin repeat-containing domain 44.166
    Gene3D Ankyrin repeat-containing domain 2.2e-45
    HMMSmart Ankyrin repeat 3600
    HMMSmart Ankyrin repeat 0.0025
    HMMSmart Ankyrin repeat 0.00022
    HMMSmart Ankyrin repeat 0.087
    HMMSmart Ankyrin repeat 0.00013
    HMMSmart Ankyrin repeat 0.53
    HMMPfam Ankyrin repeat 5.6e-06
    HMMPfam Ankyrin repeat 2.8e-05
    HMMPfam Ankyrin repeat 1.1e-07
    HMMPfam Ankyrin repeat 3.7e-06
    Coil coiled-coil 0
    HMMPanther RECEPTOR-LIKE KINASE XA21-BINDING PROTEIN 3 1.1e-253
    HMMPanther ANKYRIN REPEAT-CONTAINING 1.1e-253

    See the detailed result >

    AT2G28840.1

    Model type
    Protein coding
    Short Description
    XB3 ortholog 1 in Arabidopsis thaliana
    Computational Description
    XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR