K14135

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14135

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14135

Determination of introduced cDNA(s)

  • J013069B18 - Rice Full-length cDNAs - Original: J013069B18

    full reading [+] show sequence

    Nucleotide sequence: J013069B18 - full reading 
    GGACGGGCGA GGTTTTTTGA AAGCATCATC CTCTCTCTCT CCTCCCCCAT 
    CGACTACCCC CGACACCCAA CGGAAGCCGT AGAAGGAGAG AGAGGGGAAA 
    AGCTTGCTAT TTTATACCCT CATCTAGGGT TCCGAGCCCA CCGGCTCTCT 
    CCCCCCTTGC TGGCTTCGAG CCATCTCTCC CGCCACCGCC TCCCCCCCTC 
    CCCCCCTCCG CCTCCGATAG ATTCGCGCTC GCCCTCCTGA CCCACGGATT 
    CGGTTCCCAC GAAACCGCTC GATCTGGGGG ATCTGCTAGA TTCGTTTGTG 
    GTGGTGGTGG TGGTGGTGAG GATGTGCTTG TGCCGTTAGA TGGGGGCCAT 
    GGCGATGGTG GAGCAGGAGG GGTGCGTCGA GAACCGGCAG CCCCTGGCGG 
    CGTCGAGCTC GTCAGTTTCC GACGGAAGCA GCTATGGCGG CGGCGGCGGC 
    GGGCTCGCGC AGATGTCGCC GCCGGTGTCT AGCTCGGCGA ATTCCATCTC 
    CGGTCTTAGG CGGACAAGCG GGCCAATAAG GAGAGCAAAG GGTGGCTGGA 
    CACCAGAGGA GGACGAGACA TTGAGGAAGG CAGTTGAGGC TTATAAGGGT 
    AGAAACTGGA AGAAAATAGC CGAATGTTTT CCATACAGAA CAGAGGTACA 
    ATGCTTGCAT CGATGGCAAA AGGTTCTTAA TCCTGAACTT ATCAAAGGTC 
    CTTGGACTCA AGAGGAAGAT GATCAAATTA TTGATCTTGT AAAGAAGTAT 
    GGACCAACAA AATGGTCTGT CATAGCTAAG GCATTACCTG GCCGTATAGG 
    GAAGCAATGT CGAGAGAGGT GGCACAATCA TCTAAATCCA GAAATAAGGA 
    AAGATGCTTG GACTACTGAG GAGGAACAGG CACTCATAAA TGCTCATCGG 
    ATTTATGGGA ATAAATGGGC AGAGATAGCA AAAGTTCTTC CTGGAAGGAC 
    TGATAATTCT ATAAAGAATC ATTGGAATAG TTCTCTCAGA AAGAAGCAAG 
    ATATGTACAA TACCAGCAAT AATATGGTAG TTCCGAAACT GCTTGTTCAT 
    GATAAGTTCA AGGATAAACC AAAGCTGATG GCTATGGAGG GTCATCTTGA 
    TTTGAACAAG GCACCCATTA TCAATTCAAA AGACCAACCT GGAACAGCTC 
    ATCGGTCTAA TTGCTCAGGG TTTCTATCTC GTTCCTCATT ACCAACTGCT 
    CAGCCACTTA CTTCCCGTGA GGCATCTGTA GTTGATGGTT CCGCTGTCAC 
    TTTAGTGGCG CAAGCTCTGG AAAGTGATTC TGTCCGTGGT AAGGGCTTGG 
    AAATTGATTC TGTTCATGAG AAAGGTCTTG AGGTTAACTC GGCACCTGAT 
    CATACCGGGA ACTCTTGGAC CATTCAACTA GAAGCTGCAC CATCCAAAGG 
    TGAAGCAGAA TTATCTTTGA AGAATGAGGC ACGCTCTCTT GGTCCACTTT 
    GTTACCAGAT CCCTAACATG GAAGATGTAG TCCCTGTGAG TTCCTCACTC 
    TTTTCTGACC ATCTTACTGG GAACCATACA TCTGAACATT GTGGGGGTGA 
    TATATTGTCA CCTGCTGGCT GCACTACTCC CCCTCCAACA AAGGGAAAAT 
    TAACAAGCCA GCTTAGTGTT GATTCAATTT TGAAGAGTGC TGCTAACAGT 
    TTTCCAGGTA CTCCTTCAAT ATTAAAAAGA AGAAAACGGG ATAAATCAAC 
    ACCTGTTTCA GCTAGTGAGA TGAAGATCAG TGGATCAAAT ACTGATAGAT 
    TTTACACTCC CATGGGGATG GAACCTGCTA CAGCTACACC AGAGTCATTC 
    AAAACTACAT CTTTTTTGTC ATTGGGTTCT CTTGATGGTT CTGTAAAGAG 
    CTTTGATGTT TCACCACAAT ACCGGGCAAG GTCAAAAAGA ATGGCTCTCA 
    CGAAAACAGT TGAGAAACAG CTGGATTTTT CATCAGATGG ATTAGATACT 
    TGTGGTTCTG AGATTCTGAA CTCTTCCTGC AATAATTCCC AAAGCACACT 
    TTCTATTACC GAAGCCCCAA AACTGAAAGA AAAGGAACAT GCTGTTCAAT 
    TGGAAAATTT AACCAAGAAC TTTGCGCATA CAACCAATTT GGATGTAACC 
    TAATCTTGGA AAATGCAGGA ACTGACATCA ATCTGATGAA GTAGGACAGA 
    TGAGCTGAAG TGTCTTTCTG AGCTGATGAG CTTTTTCTCA AAGTATCACG 
    ATTAAACCAC AACAAGATCA AACAAAACCG GTGGAGAAGA ATTCCAGAAT 
    TGAAGCTTTG TACTGAGTAC AGAAGGTCCA CCAATCATTC TCCCATCTCT 
    TCTAACCAAG GTGTACAAAA GATGAGCGAC ACTCTGTAGA AGAATACATT 
    GCTCGCTGCA CTTTGTGAAT TTACGGTTAG AAAATTCAGA TTGTAGAAGC 
    CACAGGTGTG TACAAAACAA CAACGAAAAA AAATTATAGT GTTAGAACGT 
    CATTATAGCT GAATAAGAGT ATTCCTCATT GGATTGTCAG ATTTATTTTG 
    TCTTGTGCTT TCCCTTTGTC GCGAAACAGC CAGGGTCTGC TCTGTGTAAC 
    AATAATAAAA CCCGTTTTTG C

    Gene models with high sequence identity

    1. AT5G02320.2 [+] show detail - myb domain protein 3r-5
      E-value: 8e-98; Score: 355.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 8e-21
    superfamily Homeodomain-like 1.3e-17
    superfamily Homeodomain-like 5.7e-17
    HMMSmart SANT, DNA-binding 9.8e-17
    HMMSmart SANT, DNA-binding 6.4e-19
    HMMSmart SANT, DNA-binding 5.3e-18
    HMMPanther MYB 3.1e-90
    HMMPanther Myb transcription factor 3.1e-90
    Gene3D Homeodomain-related 7.8e-15
    Gene3D Homeodomain-related 2e-17
    Gene3D Homeodomain-related 1.8e-15
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 31.757
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 16.09
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 23.863
    HMMPfam Myb, DNA-binding 5.9e-16
    HMMPfam Myb, DNA-binding 3.5e-17
    HMMPfam Myb, DNA-binding 1.2e-16

    See the detailed result >

    AT5G02320.2

    Model type
    Protein coding
    Short Description
    myb domain protein 3r-5
    Curator Summary
    Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5).
    Computational Description
    myb domain protein 3r-5 (MYB3R-5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.1).
    Link
    InterPro Scan - TAIR