K14420

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14420

Determination of introduced cDNA(s)

J023018C04 - Rice Full-length cDNAs - Original: J023018C04

full reading [+] show sequence

GGAACACAAA AGAAGGGGAG AAGGGGAAGG ATAGATAGAT CGCCGCCGCC 
GCCGTCGTCT CCGCCCCTCT CCAGCCACCA GATCCAGCGA CCATGGGGCA 
GGGCACCCCG GGAGGCATGG GCAAGCAGGG CGGCGCCCCC GGCGACCGCA 
AGCCTGGCGG CGACGGCGAC AAGAAGGACC GCAAGTTCGA GCCCCCCGCC 
GCCCCCTCCC GCGTCGGCCG CAAGCAGCGC AAGCAGAAGG GCCCCGAGGC 
GGCCGCTCGC CTCCCCAACG TCGCCCCTCT CTCCAAGTGC CGCCTCCGCC 
TCCTCAAGCT CGAGCGGGTC AAGGACTACC TCCTCATGGA GGAGGAGTTC 
GTCGCCGCCC AGGAGCGCCT CCGCCCCACC GAGGACAAGA CCGAGGAGGA 
CCGATCCAAG GTCGACGACC TCCGCGGCAC CCCCATGAGC GTCGGATCCC 
TCGAGGAGAT CATCGACGAG AGCCATGCCA TCGTCTCCTC CTCCGTCGGC 
CCCGAGTACT ACGTCGGCAT CCTCTCCTTC GTCGACAAGG ACCAGCTCGA 
GCCCGGCTGC TCCATCCTCA TGCACAACAA GGTTCTGTCT GTGGTCGGAA 
TTTTGCAAGA TGAAGTTGAT CCTATGGTTT CTGTGATGAA AGTGGAGAAA 
GCTCCGCTGG AATCCTATGC TGACATTGGT GGGCTAGATG CTCAGATCCA 
AGAAATCAAA GAGGCAGTTG AGCTTCCTTT GACCCATCCT GAGCTATATG 
AAGACATTGG CATCAGGCCA CCCAAGGGAG TCATATTATA CGGAGAACCT 
GGAACAGGGA AGACACTACT TGCCAAGGCT GTTGCTAACT CCACATCCGC 
AACTTTCTTG CGTGTTGTTG GAAGTGAGCT TATTCAAAAG TATCTTGGTG 
ATGGTCCCAA ACTAGTCAGG GAACTGTTCA GAGTTGCTGA TGAGCTTTCT 
CCCTCAATAG TCTTTATCGA TGAGATTGAT GCTGTTGGAA CAAAGAGGTA 
CGATGCTCAT TCAGGAGGGG AGCGTGAGAT TCAGAGAACT ATGTTGGAGC 
TTCTTAACCA GTTAGATGGT TTTGACTCTC GTGGTGATGT CAAAGTTATA 
CTAGCAACAA ATCGCATCGA AAGTCTTGAT CCAGCATTGC TACGCCCTGG 
TCGCATAGAT CGGAAGATAG AATTTCCTCT GCCAGATATT AAAACTAGGC 
GGCGCATCTT CCAGATACAC ACATCTAAGA TGACATTGGC AGATGATGTG 
AACCTGGAAG AGTTTGTCAT GACCAAGGAT GAGTTTTCCG GTGCTGATAT 
CAAAGCAATA TGTACTGAAG CTGGACTTCT TGCTTTGAGA GAACGCCGAA 
TGAAGGTGAC ACATGCTGAC TTCAAGAAGG CAAAGGAGAA GGTGATGTTC 
AAGAAGAAGG AAGGTGTGCC GGAGGGTCTT TACATGTGAT GTGCTCACTG 
GTCGCCAGTG ACGGGGTGGG TAACCTTGTA GGACGAATAT ATATTTGATT 
TATCACATAG GCTATGCTGC CTTGGTTTGT AAAATACTTG TGAAATTTGT 
TTTGTTACTT CTTGGGATGG AGTTGGATAG AACAAATTGC ATTTCTC

Gene models with high sequence identity

AT4G29040.1 [+] show detail - regulatory particle AAA-ATPase 2A
E-value: 0; Score: 750.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.5e-56
Gene3D	no description	1.1e-18
superfamily	P-loop containing nucleoside triphosphate hyd	1.4e-68
HMMPfam	ATPase, AAA-type, core	1.4e-40
HMMTigr	26S proteasome subunit P45	8.9e-169
HMMPanther	26S PROTEASE REGULATORY SUBUNIT 4	6.4e-241
HMMPanther	26S PROTEASE REGULATORY SUBUNIT	6.4e-241
HMMSmart	ATPase, AAA+ type, core	2e-20
PatternScan	ATPase, AAA-type, conserved site	0

See the detailed result >

AT4G29040.1

Model type: Protein coding
Short Description: regulatory particle AAA-ATPase 2A
Curator Summary: 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,
Computational Description: regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink).
Link: InterPro Scan - TAIR